View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10226_high_9 (Length: 353)
Name: NF10226_high_9
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10226_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 42754261 - 42754594
Alignment:
| Q |
1 |
agcttgttgatttgtgtttgggaattggattcagcatcatattcatatatcttgtggtgaatatgcacacctttgaactcacaaaaacaactatctggtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42754261 |
agcttgttgatttgtgtttgggaattggattcagcatcatattcatatatcttgtggtgaatatgcacacctttgaactcacaaaaacaactatctggtt |
42754360 |
T |
|
| Q |
101 |
cagctaatagctttggatccactaattcatcctgatctattccagctatctctttccttttcttctttgatcccacatccaataactgctctgaacaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42754361 |
cagctaatagctttggatccactaattcatcctgatctattccagctatctctttccttttcttctttgatcccacatccaataactgctctgaacaaat |
42754460 |
T |
|
| Q |
201 |
gagattcaatccaacatcatgaacaacaactcacataatataagtaaccaaataaataagtctctgcttagataaactatttaatttcgtgcttatagca |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42754461 |
gagattcaatccaacatcatg---aacaactcacataatataagtaaccaaataaataagtctctgcttagataaactatttaatttcgtgcttatagca |
42754557 |
T |
|
| Q |
301 |
tatgcgcttatcatataaatgcttacatataagctat |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
42754558 |
tatgcgcttatcatataaatgcttacatataagctat |
42754594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 22684680 - 22684632
Alignment:
| Q |
290 |
tgcttatagcatatgcgcttatcatataaatgcttacatataagctatt |
338 |
Q |
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|
| T |
22684680 |
tgcttataccatatgcgcttatcatataaatgcttctgtataagctatt |
22684632 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 338
Target Start/End: Complemental strand, 741051 - 740984
Alignment:
| Q |
271 |
gataaactatttaatttcgtgcttatagcatatgcgcttatcatataaatgcttacatataagctatt |
338 |
Q |
| |
|
||||||| |||||||| ||||| | ||||| | ||| |||||||||||||||||| ||||||||||| |
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|
| T |
741051 |
gataaacaatttaattacgtgcctgtagcagaagcgtttatcatataaatgcttatgtataagctatt |
740984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 26516205 - 26516252
Alignment:
| Q |
291 |
gcttatagcatatgcgcttatcatataaatgcttacatataagctatt |
338 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| ||||||||||| |
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|
| T |
26516205 |
gcttatagcataagcgcttatcatataagtgcttatgtataagctatt |
26516252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 20982300 - 20982251
Alignment:
| Q |
289 |
gtgcttatagcatatgcgcttatcatataaatgcttacatataagctatt |
338 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||||| ||||||||||| |
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|
| T |
20982300 |
gtgcttatagcataagtgcttatcatataagtgcttatgtataagctatt |
20982251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Complemental strand, 34788577 - 34788543
Alignment:
| Q |
304 |
gcgcttatcatataaatgcttacatataagctatt |
338 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
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|
| T |
34788577 |
gcgcttatcatataaatgcttacgtataagctatt |
34788543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 28769500 - 28769455
Alignment:
| Q |
293 |
ttatagcatatgcgcttatcatataaatgcttacatataagctatt |
338 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||||||||||| |
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|
| T |
28769500 |
ttatagcataagtgcttatcatataaatgcttatgtataagctatt |
28769455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 31875720 - 31875675
Alignment:
| Q |
293 |
ttatagcatatgcgcttatcatataaatgcttacatataagctatt |
338 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| ||||||||||| |
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|
| T |
31875720 |
ttatagcataagcgcttatcatataagtgcttatctataagctatt |
31875675 |
T |
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