View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10226_low_10 (Length: 370)
Name: NF10226_low_10
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10226_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 36085864 - 36085651
Alignment:
| Q |
14 |
tggacatcatttcgaatctaattatatgaatcttttaggatgaaggtttggatgtgattgtagaaggattggatactttgaaaaacatggcacacgatat |
113 |
Q |
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| T |
36085864 |
tggacatcatttcgaatctaattatatgaatcttttaggatgaaggtttggatgtgattgtagaaggattggatactttgaaaaacatggcacacgatat |
36085765 |
T |
|
| Q |
114 |
gaatgaggtcagattccctattgtgtttgtctttcatcctttgcgtgtgtgatatacttatttgaatgtttaagtttgctaaatacaggaatttgatagg |
213 |
Q |
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| T |
36085764 |
gaatgaggtcagattccctattgtgtttgtctttcatcctttgcgtgtgtgatatacttatttgaatgtttaagtttgctaaatacaggaatttgatagg |
36085665 |
T |
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| Q |
214 |
caagttttactgat |
227 |
Q |
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|||||||||||||| |
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| T |
36085664 |
caagttttactgat |
36085651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 226 - 329
Target Start/End: Complemental strand, 36084136 - 36084034
Alignment:
| Q |
226 |
atattcttaaatgataagagaagtttattaataaatctatgaaaaaatatatctcatttgaattgtgtatcttgttctcattcctaaataagagttcttt |
325 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36084136 |
atattcttaaatgataagaaaagtttattaataaatctatgaaaaaatatatctcatttgaattgtgtatcttgttctcattcct-aataagagttcttt |
36084038 |
T |
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| Q |
326 |
ttca |
329 |
Q |
| |
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|||| |
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| T |
36084037 |
ttca |
36084034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 36069851 - 36069776
Alignment:
| Q |
229 |
ttcttaaatgataagagaagttt-attaataaatctatgaaaaaatatatctcatttgaattgtgtatcttgttct |
303 |
Q |
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| T |
36069851 |
ttcttaactgatgagagaatttttattaataaatctatgataaaatatatctcattttaattgtgtatcttgttct |
36069776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 40730144 - 40730349
Alignment:
| Q |
14 |
tggacatcatttcgaatctaattatatgaatcttttaggatgaaggtttggatgtgattgtagaaggattggatactttgaaaaacatggcacacgatat |
113 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40730144 |
tggacatcatttcaaatctaattatatgaatcttttaggatgaaggtttggatgtgattgcagaaggattggatactttgaaaaacatggcacacgatat |
40730243 |
T |
|
| Q |
114 |
gaatgaggtcagattccctattgtgtttgtctttcatcctttgcgtgtgtgatatacttatttgaatgtttaagtttgctaaatacaggaatttgatagg |
213 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
40730244 |
gaacgaggtcagattgcctattgtgtttgtctttcatcctttgcgtgtgtgatatatttatttgaatgtttaagtttgtcaaatgcaggaatttgatagg |
40730343 |
T |
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| Q |
214 |
caagtt |
219 |
Q |
| |
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|||||| |
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|
| T |
40730344 |
caagtt |
40730349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 28511149 - 28511073
Alignment:
| Q |
49 |
taggatgaaggtttggatgtgattgtagaaggattggatactttgaaaaacatggcacacgatatgaatgaggtcag |
125 |
Q |
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|||||| ||||||||||| |||||| |||||||||||||||||||||| ||||||| || || |||||||||||||| |
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| T |
28511149 |
taggatcaaggtttggatatgattgcagaaggattggatactttgaaagacatggcgcatgacatgaatgaggtcag |
28511073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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