View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10226_low_11 (Length: 360)
Name: NF10226_low_11
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10226_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 38320561 - 38320886
Alignment:
| Q |
19 |
aatcatgcactaccgagacttatatttgtttgaccgctcattttgctgacgcgaattggaaattaaagagtaaggttctcaccttctgtactgttgatcc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38320561 |
aatcatgcactaccgagacttatatttgtttgaccgctcattttgctgacgcgaattggaaattaaagagtaaggttctcaccttctgtactgttgatcc |
38320660 |
T |
|
| Q |
119 |
cactggagctgagatgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagatcttctctctcactttagatgattcatctgataat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38320661 |
cactggagctgagatgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagatcttctctctcactttagatgattcatctgagaat |
38320760 |
T |
|
| Q |
219 |
gacattttgcaagaactattgaaaactcaacttggtttgcaaaatgggttgttatgtgatggagagttctttcacgggcattgttatgcacgtcttgtaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| |
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| T |
38320761 |
gacattttgcaagaactattgaaaactcaacttggtttgcaaaatgggttgttatgtgatggggagttctttcacgggcattgttatgcacgtgttttaa |
38320860 |
T |
|
| Q |
319 |
aattgattgttgaagaggggttgaaa |
344 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
38320861 |
aattgattgttgaagaggggttgaaa |
38320886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 27 - 340
Target Start/End: Original strand, 38313062 - 38313378
Alignment:
| Q |
27 |
actaccgagacttatatttgtttgaccgctcattttgctgacgcgaattggaaattaaagagtaaggttctcaccttctgtactgttga---tcccactg |
123 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| | ||| ||||||||||| ||||| ||||| ||||||| ||||||| |||| | ||| |||| |
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|
| T |
38313062 |
actactgagacttatatttgtttgactgctcatttcgttgatgcgaattggaagttaaatagtaaagttctcaacttctgtcttgtttaccctcctactg |
38313161 |
T |
|
| Q |
124 |
gagctgagatgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagatcttctctctcactttagatgattcatctgataatgacat |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
38313162 |
gagctgagatgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagattttctctctcactttagatgattcatctgagaatgacat |
38313261 |
T |
|
| Q |
224 |
tttgcaagaactattgaaaactcaacttggtttgcaaaatgggttgttatgtgatggagagttctttcacgggcattgttatgcacgtcttgtaaaattg |
323 |
Q |
| |
|
||||||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| ||| || || |||| || |
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|
| T |
38313262 |
tttgcaagaacaattaaaaaatcaactttgtttgcaaaatgggttgttatgtgatggagagttctttcatgtgcattgttttgcccgcgttttaaacctg |
38313361 |
T |
|
| Q |
324 |
attgttgaagaggggtt |
340 |
Q |
| |
|
|||||||| || ||||| |
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|
| T |
38313362 |
attgttgatgaagggtt |
38313378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 33 - 340
Target Start/End: Original strand, 38305749 - 38306056
Alignment:
| Q |
33 |
gagacttatatttgtttgaccgctcattttgctgacgcgaattggaaattaaagagtaaggttctcaccttctgtactgttgatcccactggagctgaga |
132 |
Q |
| |
|
||||||||||| |||||||| || ||||||| ||||||| ||||||| ||||| ||||||||||||| ||||||| |||| ||||||| ||| |||| |
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|
| T |
38305749 |
gagacttatatctgtttgactgcgcattttgttgacgcggattggaagttaaatagtaaggttctcaacttctgtgttgttttacccactgtagccgaga |
38305848 |
T |
|
| Q |
133 |
tgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagatcttctctctcactttagatgattcatctgataatgacattttgcaaga |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| || |||| | | | ||||||||||||| |
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|
| T |
38305849 |
tgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagattttctctctcaatttagaggactcatttaaggacaacattttgcaaga |
38305948 |
T |
|
| Q |
233 |
actattgaaaactcaacttggtttgcaaaatgggttgttatgtgatggagagttctttcacgggcattgttatgcacgtcttgtaaaattgattgttgaa |
332 |
Q |
| |
|
|| |||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||| |||||| || ||||| ||||||||||| |
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|
| T |
38305949 |
acagttgaaatctcatcttggtttggaaaatggtttgttatgtgatggagagttctttcacaggcattgttctgcacgcgttttaaaactgattgttgaa |
38306048 |
T |
|
| Q |
333 |
gaggggtt |
340 |
Q |
| |
|
|||||||| |
|
|
| T |
38306049 |
gaggggtt |
38306056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 33 - 344
Target Start/End: Original strand, 38299830 - 38300141
Alignment:
| Q |
33 |
gagacttatatttgtttgaccgctcattttgctgacgcgaattggaaattaaagagtaaggttctcaccttctgtactgttgatcccactggagctgaga |
132 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||| | |||||| |||| ||||||| | |||||| |
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|
| T |
38299830 |
gagacttatatctgtttgaccgctcattttgttgacgcggattggaagttaaatagtaaggttcttaatttctgtcttgttttacccactgtatctgaga |
38299929 |
T |
|
| Q |
133 |
tgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagatcttctctctcactttagatgattcatctgataatgacattttgcaaga |
232 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||| ||||||| ||||||||||||||||| ||||||| | | ||| | ||||||||||| |
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|
| T |
38299930 |
tgtgtgagagaatggttgagttcttgaatgattggggaatagaggaaaagattttctctctcactttagaagattcatttaagaataaaattttgcaaga |
38300029 |
T |
|
| Q |
233 |
actattgaaaactcaacttggtttgcaaaatgggttgttatgtgatggagagttctttcacgggcattgttatgcacgtcttgtaaaattgattgttgaa |
332 |
Q |
| |
|
| ||| ||| |||||||| |||||| ||||||||||||||||| || |||||||||||||||||||||| |||||| || ||||| ||||||||||| |
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| T |
38300030 |
aaaatttcaaaatcaacttgttttgcataatgggttgttatgtgacggggagttctttcacgggcattgttttgcacgcattttaaaactgattgttgaa |
38300129 |
T |
|
| Q |
333 |
gaggggttgaaa |
344 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38300130 |
gaggggttgaaa |
38300141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 37 - 344
Target Start/End: Original strand, 38325326 - 38325636
Alignment:
| Q |
37 |
cttatatttgtttgaccgctcattttgctgacgcgaattggaaattaaagagtaaggttctcaccttctgtactgttgatcc---cactggagctgagat |
133 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||||| ||||||| ||| | || |||||| | |||||| |
|
|
| T |
38325326 |
cttacatttgtctgaccgctcattttgttgacgcgaattggaaggtaaatagtaaggttctcaatttctgtagtgtctaccctgacactggtggtgagat |
38325425 |
T |
|
| Q |
134 |
gtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagatcttctctctcactttagatgattcatctgataatgacattttgcaagaa |
233 |
Q |
| |
|
|||||| |||||| |||| || |||| |||||||||||||||||||||||| || ||||| ||||||||||||||| || ||| | || | |||||| |
|
|
| T |
38325426 |
gtgtgaaagaatgattgaattgttgaatgattggggaatagagaaaaagattttttctcttactttagatgattcagtcgagaataatgttctacaagaa |
38325525 |
T |
|
| Q |
234 |
ctattgaaaactcaacttggtttgcaaaatgggttgttatgtgatggagagttctttcacgggcattgttatgcacgtcttgtaaaattgattgttgaag |
333 |
Q |
| |
|
| ||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| || |||| |||||||||||| |
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|
| T |
38325526 |
caattgaaatctcatcttggtttgcaaaatgggttgttgtgtgatggagagttctttcacgggcactgttttgcacgtgttttaaatctgattgttgaag |
38325625 |
T |
|
| Q |
334 |
aggggttgaaa |
344 |
Q |
| |
|
| ||||||||| |
|
|
| T |
38325626 |
acgggttgaaa |
38325636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 33 - 340
Target Start/End: Original strand, 38316477 - 38316787
Alignment:
| Q |
33 |
gagacttatatttgtttgaccgctcattttgctgacgcgaattggaaattaaagagtaaggttctcaccttctgtactgttga---tcccactggagctg |
129 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||| || || ||||||||||||| ||| || |||| | ||| | || ||| | |
|
|
| T |
38316477 |
gagacttatatttgtttgacagctcattttgttgacgcgaattggaagttgaatagtaaggttctcaactttcgtcttgtttaccctcctattgcagcgg |
38316576 |
T |
|
| Q |
130 |
agatgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagatcttctctctcactttagatgattcatctgataatgacattttgca |
229 |
Q |
| |
|
|||| | ||||||||| |||| || |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| | || ||| |
|
|
| T |
38316577 |
agatttcggagagaatgattgaattgttgaatgattggggaatagagaaaaagattttctctctcactttagatgattcatttgagaataatgttatgct |
38316676 |
T |
|
| Q |
230 |
agaactattgaaaactcaacttggtttgcaaaatgggttgttatgtgatggagagttctttcacgggcattgttatgcacgtcttgtaaaattgattgtt |
329 |
Q |
| |
|
||||| |||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||| | ||||||| |||| | || ||||| |||||| | |
|
|
| T |
38316677 |
agaacaattgaaaaatcaactttgtttgcgaaatgggttgttatgtgatggagagttctttcatgctcattgttttgcatgcgttttaaaactgattgct |
38316776 |
T |
|
| Q |
330 |
gaagaggggtt |
340 |
Q |
| |
|
||||||||||| |
|
|
| T |
38316777 |
gaagaggggtt |
38316787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 36 - 339
Target Start/End: Original strand, 38308485 - 38308783
Alignment:
| Q |
36 |
acttatatttgtttgaccgctcattttgctgacgcgaattggaaattaaagagtaaggttctcaccttctgtactgttga---tcccactggagctgaga |
132 |
Q |
| |
|
|||||||||||||| |||||||||||| || |||| ||||||| ||||| |||||| || ||| |||||| |||| ||| |||||||| | | |
|
|
| T |
38308485 |
acttatatttgtttatccgctcattttgttggcgcggattggaagttaaatagtaagcttttcaatttctgtcttgttttccctcctactggagcctata |
38308584 |
T |
|
| Q |
133 |
tgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagatcttctctctcactttagatgattcatctgataatgacattttgcaaga |
232 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||||||||||| || || | |||||||||||||||| ||| ||| | || ||||| | |
|
|
| T |
38308585 |
tgtgtgagagaatggttgaat--------gattggggagtagagaaaaagattttttcatttactttagatgattcatttgagaataatgttctgcaaca |
38308676 |
T |
|
| Q |
233 |
actattgaaaactcaacttggtttgcaaaatgggttgttatgtgatggagagttctttcacgggcattgttatgcacgtcttgtaaaattgattgttgaa |
332 |
Q |
| |
|
|| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| ||||| | || ||||| ||||||||||| |
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|
| T |
38308677 |
acaattgaagactcaacttggtttggaaaatgggttgttatgtgatggagagttctttcatgctcattgttttgcacatgttttaaaactgattgttgaa |
38308776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 26 - 310
Target Start/End: Complemental strand, 38850875 - 38850588
Alignment:
| Q |
26 |
cactaccgagacttatatttgtttgaccgctcattttgctgacgcgaattggaaattaaagagtaaggttctcaccttctgtactgttgatccc---act |
122 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||| ||||||||||||||| ||||| ||||||||| ||| ||| || |||| |||| ||| |
|
|
| T |
38850875 |
cactactgagacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaatttccgtcttgtttatcctcctact |
38850776 |
T |
|
| Q |
123 |
ggagctgagatgtgtgagagaatggttgagtttttgagtgattggggaatagagaaaaagatcttctctctcactttagatgattcatctgataatgaca |
222 |
Q |
| |
|
| | ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| | |||||||||||||| ||||| | |
|
|
| T |
38850775 |
agtggggagatttgtgagagaatggttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgaga |
38850676 |
T |
|
| Q |
223 |
ttttgcaagaactattgaaaactcaacttggtttgcaaaatgggttgttatgtgatggagagttctttcacgggcattgttatgcacg |
310 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| | | |||||| |||||| |
|
|
| T |
38850675 |
ttttgcaagaacaattgaaaactcaacttgttttgcaaaatggtttgttatgtgatggagagttctttcatgtgaattgttttgcacg |
38850588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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