View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10226_low_16 (Length: 299)
Name: NF10226_low_16
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10226_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 116 - 284
Target Start/End: Complemental strand, 1740101 - 1739933
Alignment:
| Q |
116 |
atccaccaagttgataaacaagacatggaagatgtttgtgtaaaactggcattggaaataaattgcaatatgcatttatcatagatatatattaaaataa |
215 |
Q |
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| T |
1740101 |
atccaccaagttgataaacaagacatggaagatgtttgtgtaaaactggcattggaaataaattgcaatatgcatttatcatagatatatattaaaataa |
1740002 |
T |
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| Q |
216 |
cttcatcaaggaagcaatcaaaacatgataagttctaataattgctcttctaaatgtatatgctaattt |
284 |
Q |
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| T |
1740001 |
cttcatcaaggaagcaatcaaaacatgataagttctaatatttgctcttctaaatgtatatactaattt |
1739933 |
T |
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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 1740225 - 1740176
Alignment:
| Q |
46 |
tagtcggcgcgcaaggtgtgcaagtgtcgtaaatttcaaggtcagtcgaa |
95 |
Q |
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| T |
1740225 |
tagtcggcgcgcaaggtgtgcaagtgtcgtaaatttcaaggtcagtcgaa |
1740176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 1745444 - 1745349
Alignment:
| Q |
177 |
attgcaatatgcatttatcatagatatatattaaaataacttcatcaaggaagcaatcaaaacatgataagttctaataattgctcttctaaatgtatat |
276 |
Q |
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| T |
1745444 |
attgcaatatgcattcgtcatagatat----taaaaaaccttaatcaaggaagcaatcaaaacatgataaatactaataattgcttttctaaatatatat |
1745349 |
T |
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