View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10226_low_20 (Length: 261)
Name: NF10226_low_20
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10226_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 5466494 - 5466725
Alignment:
| Q |
17 |
gttattgctctcctctttctttttgcatcaactcagtgtgtagttatgagccttgatgttagcactctttgcattaaagaagagagggtggcactcctta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5466494 |
gttattgctctcctctttctttttgcatcaactcagtgtgtagttatgagccttgatgttagcactctttgcattaaagaagagagggtggcactcctta |
5466593 |
T |
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| Q |
117 |
acatnnnnnnngatctgaacgatccttccaattgcctttcctcttgggttgggaaggattgctgtgactggattggtatacaatgtgacaataaaacagg |
216 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5466594 |
acataaaaaaagatctgaacgatccttccaattgcctttcctcttgggttgggaaggattgctgtgactggattggtatacaatgtgacaataaaacagg |
5466693 |
T |
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| Q |
217 |
taacattcttaagcttgatctccagcaccttc |
248 |
Q |
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|||||||||||||||||||||||||| ||||| |
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| T |
5466694 |
taacattcttaagcttgatctccagccccttc |
5466725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 5481247 - 5481467
Alignment:
| Q |
17 |
gttattgctctcctctttctttttgcatcaactcagtgtgtagttatgagccttgatgttagcactctttgcattaaagaagagagggtggcactcctta |
116 |
Q |
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|||||| ||||| |||| ||||||||||||||||| |||| ||||| |||||| |||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
5481247 |
gttattcctctcttcttcctttttgcatcaactcaatgtgaagttaaaagccttaatgttagcactctttgcattaaggaagagagaatggcactcctta |
5481346 |
T |
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| Q |
117 |
acatnnnnnnngatctgaacgatccttccaattgcctttcctcttgggttgggaaggattgctgtgactggattggtatacaatgtgacaataaaacagg |
216 |
Q |
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| T |
5481347 |
acgtcaaaaaagatctcaatgatccttacaattgcctttcttcatgggttgggaaagattgttgtcgctggattggtatagaatgtgactatcaaactgg |
5481446 |
T |
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| Q |
217 |
taacattcttaagcttgatct |
237 |
Q |
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| ||||||||||||||||||| |
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| T |
5481447 |
ttacattcttaagcttgatct |
5481467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 5476160 - 5476350
Alignment:
| Q |
17 |
gttattgctctcctctttctttttgcatcaactcagtgtgtagttatgagccttgatgttagcactctttgcattaaagaagagagggtggcactcctta |
116 |
Q |
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|||||| ||||| |||| ||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
5476160 |
gttatttctctcttcttcctttttgcatcaactcaatgtgaagttaagagccttaatgttagcactctttgcattaaggaagagagagtggcactcctta |
5476259 |
T |
|
| Q |
117 |
acatnnnnnnngatctgaacgatccttccaattgcctttcctcttgggttgggaaggattgctgtgactggattggtatacaatgtgacaa |
207 |
Q |
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|||| ||||| || |||||||||||||||||||| || ||||| ||| | ||||||||| | |||| ||||| |||||||||| |
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| T |
5476260 |
acatcaaaaaagatctcaatgatccttccaattgcctttcgtcatgggtcggggaagattgctgtaattggaagggtattgaatgtgacaa |
5476350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 5489284 - 5489471
Alignment:
| Q |
20 |
attgctctcctctttctttttgcatcaactcagtgtgtagttatgagccttgatgttagcactctttgcattaaagaagagagggtggcactccttaaca |
119 |
Q |
| |
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||||| ||| ||||||||||||||||||| |||| |||| | |||||| ||||||| |||||||||||||| |||||||| |||||||||||||| | |
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| T |
5489284 |
attgccctcttctttctttttgcatcaacccagtacttagtgactagccttaatgttagtactctttgcattaaggaagagagagtggcactccttaaaa |
5489383 |
T |
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| Q |
120 |
tnnnnnnngatctgaacgatccttccaattgcctttcctcttgggttgggaaggattgctgtgactggattggtatacaatgtgacaa |
207 |
Q |
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| ||||| || |||||||| ||||||||||| || ||||||||| | ||||| ||| | |||| |||||| |||||||||| |
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| T |
5489384 |
tcaaaaaagatctcaaggatccttcaaattgcctttcttcatgggttggggaagattgttgtaattggaagggtatagaatgtgacaa |
5489471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 207
Target Start/End: Original strand, 5484144 - 5484286
Alignment:
| Q |
65 |
agccttgatgttagcactctttgcattaaagaagagagggtggcactccttaacatnnnnnnngatctgaacgatccttccaattgcctttcctcttggg |
164 |
Q |
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|||||| |||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| || ||||| |||||||||||||| || || | |
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| T |
5484144 |
agccttaatgttagcactctttgcattaaggaagagagagtggcactccttaacatcaaaatagatctcaaagatccatccaattgcctttcttcatgag |
5484243 |
T |
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| Q |
165 |
ttgggaaggattgctgtgactggattggtatacaatgtgacaa |
207 |
Q |
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||||| | ||||||||| | |||| ||||| |||||||||| |
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| T |
5484244 |
ttggggaagattgctgtaattggaagggtattgaatgtgacaa |
5484286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 5495076 - 5495253
Alignment:
| Q |
30 |
tctttctttttgcatcaactcagtgtgtagttatgagccttgatgttagcactctttgcattaaagaagagagggtggcactccttaacatnnnnnnnga |
129 |
Q |
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||||||||||||||||||| || | |||||| | ||| | |||||||||||||||||||||| |||||||| |||||||||||||| || || |
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| T |
5495076 |
tctttctttttgcatcaacccaatatgtagtgagtagcaataatgttagcactctttgcattaaggaagagagagtggcactccttaaaatcaaaaaaga |
5495175 |
T |
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| Q |
130 |
tctgaacgatccttccaattgcctttcctcttgggttgggaaggattgctgtgactggattggtatacaatgtgacaa |
207 |
Q |
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||| || ||||| |||||||| ||||| || ||||| ||| | ||||||||| | |||| |||||||||||| |||| |
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| T |
5495176 |
tctcaaagatccatccaattgtctttcttcatgggtcggggaagattgctgtaattggaagggtatacaatgtaacaa |
5495253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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