View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10226_low_21 (Length: 250)
Name: NF10226_low_21
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10226_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 20531489 - 20531438
Alignment:
| Q |
189 |
actccttcctcatacaaacaaaattccaaccaatccaaattattttcctatg |
240 |
Q |
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| T |
20531489 |
actccttcctcatacaaacaaaattccaaccaatacaaattattttcctatg |
20531438 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 27502604 - 27502648
Alignment:
| Q |
32 |
atacaaaggtgttttgataatgtgctccacaacctgttgattaaa |
76 |
Q |
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| T |
27502604 |
atacaaatgtgtgttgacaatgtgctccaccacctgttgattaaa |
27502648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 23265345 - 23265451
Alignment:
| Q |
1 |
tccaaatcagcctatcctcacgaacagaagaatacaaaggtgttttgataatgtgctccacaacctgttgattaaatattgaatgcaagaaaggcatatt |
100 |
Q |
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| T |
23265345 |
tccatatcagcctatcttcatgcactaaaggatataaaggtgtgttgataatgtgctccacaacctggtgattgaaaattgaatgcagaaaaggcagatt |
23265444 |
T |
|
| Q |
101 |
ccaagac |
107 |
Q |
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| T |
23265445 |
ccaagac |
23265451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 33907655 - 33907819
Alignment:
| Q |
1 |
tccaaatcagcctatcctcacgaacagaagaatacaaaggtgttttgataatgtgctccacaacctgttgattaaatattgaatgcaagaaaggcatatt |
100 |
Q |
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| T |
33907655 |
tccatatcagcctatcttcatgtactgaaggaaataaaggtgtgttgataatgtgctccacaacctggtgattgaagacagaatgcagaaaaggcagatt |
33907754 |
T |
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| Q |
101 |
ccaagacnnnnnnncctgcaagatacaatctgaaacacgcagatttgctagcgtagacgcaacat |
165 |
Q |
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| T |
33907755 |
ccaagacttatggttcggtaaaatacaatctgagacacgcaggttagctagtgtggacgcaacat |
33907819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 44016046 - 44015941
Alignment:
| Q |
1 |
tccaaatcagcctatcctcacgaacagaagaatacaaaggtgttttgataatgtgctccacaacctgttgattaaatattgaatgcaagaaaggcatatt |
100 |
Q |
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||||||||| | |||||| || || |||| |||||||||||| |||| ||| |||||||| ||||| ||||| || | |||||||| |||| || ||| |
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| T |
44016046 |
tccaaatcaagcgatcctcgcgtactgaaggatacaaaggtgtgttgacaatatgctccaccacctgctgattgaaaactgaatgcagaaaagacagatt |
44015947 |
T |
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| Q |
101 |
ccaaga |
106 |
Q |
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|||||| |
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|
| T |
44015946 |
ccaaga |
44015941 |
T |
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