View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10226_low_22 (Length: 250)

Name: NF10226_low_22
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10226_low_22
NF10226_low_22
[»] chr8 (9 HSPs)
chr8 (89-202)||(8227249-8227362)
chr8 (89-202)||(9762932-9763045)
chr8 (89-202)||(7968436-7968549)
chr8 (97-202)||(36582901-36583006)
chr8 (89-202)||(11481429-11481542)
chr8 (94-202)||(13355815-13355923)
chr8 (89-197)||(6870634-6870742)
chr8 (94-164)||(7987213-7987282)
chr8 (94-153)||(7987283-7987342)
[»] chr7 (18 HSPs)
chr7 (89-202)||(28636379-28636492)
chr7 (89-202)||(5972973-5973086)
chr7 (89-191)||(23809680-23809782)
chr7 (89-202)||(38440446-38440559)
chr7 (89-202)||(2944080-2944193)
chr7 (94-194)||(7767084-7767184)
chr7 (94-202)||(11039196-11039304)
chr7 (127-202)||(25502153-25502228)
chr7 (94-202)||(30541496-30541604)
chr7 (95-190)||(33189415-33189508)
chr7 (94-197)||(36298792-36298895)
chr7 (94-202)||(1053128-1053236)
chr7 (94-173)||(31457303-31457384)
chr7 (89-202)||(22519204-22519316)
chr7 (136-179)||(15954686-15954729)
chr7 (94-202)||(27336938-27337046)
chr7 (137-179)||(47925012-47925054)
chr7 (159-196)||(40910567-40910604)
[»] chr5 (11 HSPs)
chr5 (89-202)||(39207122-39207235)
chr5 (94-202)||(3926206-3926314)
chr5 (89-202)||(35188598-35188711)
chr5 (92-202)||(23429246-23429356)
chr5 (107-202)||(42878917-42879012)
chr5 (129-197)||(26621391-26621459)
chr5 (94-202)||(39800427-39800535)
chr5 (103-202)||(2209546-2209644)
chr5 (136-202)||(33742765-33742833)
chr5 (136-188)||(40056987-40057039)
chr5 (89-117)||(42837606-42837634)
[»] chr4 (14 HSPs)
chr4 (89-190)||(41039359-41039460)
chr4 (89-202)||(23626855-23626965)
chr4 (89-202)||(38951634-38951747)
chr4 (89-177)||(22278351-22278439)
chr4 (90-202)||(40714857-40714969)
chr4 (89-197)||(42555330-42555438)
chr4 (94-202)||(8819321-8819429)
chr4 (94-202)||(29117034-29117142)
chr4 (89-202)||(43624426-43624541)
chr4 (94-202)||(51357182-51357289)
chr4 (136-202)||(17120334-17120400)
chr4 (148-203)||(19841753-19841808)
chr4 (94-175)||(36464840-36464920)
chr4 (136-202)||(40571958-40572025)
[»] chr2 (9 HSPs)
chr2 (89-202)||(13807557-13807670)
chr2 (89-202)||(5704615-5704728)
chr2 (89-202)||(31575946-31576059)
chr2 (93-202)||(5110220-5110329)
chr2 (93-202)||(5938740-5938849)
chr2 (93-202)||(45151247-45151356)
chr2 (93-184)||(13626323-13626414)
chr2 (136-197)||(45458442-45458503)
chr2 (94-202)||(42625039-42625147)
[»] chr1 (14 HSPs)
chr1 (89-190)||(48379090-48379191)
chr1 (91-202)||(11894302-11894413)
chr1 (85-202)||(31292756-31292870)
chr1 (91-202)||(36728755-36728866)
chr1 (89-202)||(47140798-47140911)
chr1 (94-202)||(29678324-29678432)
chr1 (89-202)||(17562786-17562899)
chr1 (89-202)||(31585233-31585346)
chr1 (136-202)||(38264380-38264446)
chr1 (119-202)||(25987400-25987482)
chr1 (138-202)||(19884459-19884523)
chr1 (136-184)||(2191843-2191891)
chr1 (136-179)||(52252714-52252757)
chr1 (140-202)||(25294014-25294076)
[»] chr6 (9 HSPs)
chr6 (89-202)||(8576762-8576875)
chr6 (89-195)||(10788495-10788601)
chr6 (94-202)||(35167296-35167404)
chr6 (89-170)||(7622403-7622484)
chr6 (89-202)||(28582153-28582265)
chr6 (136-202)||(7245534-7245600)
chr6 (93-202)||(34433207-34433316)
chr6 (127-195)||(642103-642171)
chr6 (98-202)||(10408977-10409081)
[»] chr3 (13 HSPs)
chr3 (89-202)||(5295220-5295333)
chr3 (89-202)||(25874708-25874821)
chr3 (89-197)||(21288114-21288222)
chr3 (89-202)||(3778912-3779025)
chr3 (89-202)||(27926637-27926739)
chr3 (89-202)||(13825920-13826033)
chr3 (136-202)||(36584410-36584476)
chr3 (136-202)||(48251717-48251783)
chr3 (94-202)||(12149030-12149138)
chr3 (131-202)||(26187934-26188005)
chr3 (138-179)||(13084754-13084795)
chr3 (89-157)||(32847582-32847650)
chr3 (93-173)||(37341418-37341498)
[»] scaffold0155 (1 HSPs)
scaffold0155 (89-202)||(6893-7006)
[»] scaffold0115 (1 HSPs)
scaffold0115 (94-202)||(22060-22168)
[»] scaffold0057 (1 HSPs)
scaffold0057 (136-175)||(66580-66619)
[»] scaffold0041 (1 HSPs)
scaffold0041 (159-196)||(62490-62527)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 8227249 - 8227362
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||| |||    
T  8227249 tatgtttttgttaaatcaaagaactttatttttattaaatgtaagggactttatttatgtttttgtttagtcaatgatctttgttgttattgtaatgtat 8227348  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  8227349 gaatattatgtttt 8227362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 9762932 - 9763045
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||| |||||||||||| ||| ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||    
T  9762932 tatgtttttgttaaattaaagaactttatttttattaaatgtaagggactttatttatgtttttgttgagtcaatgatttttgttgttattgtaatgtat 9763031  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  9763032 gaatattatgtttt 9763045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 7968436 - 7968549
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| |||| |||    
T  7968436 tatgcttttgttaaatgaaagaactttatttttattaaatgtaagagactttatttatgtttttgtttagccaatgatctttgttgttattgtaatgtat 7968535  T
Q  189 gaatattatatttt 202  Q
    | ||||||| ||||    
T  7968536 ggatattatgtttt 7968549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 202
Target Start/End: Original strand, 36582901 - 36583006
Alignment:
Q  97 tgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatatta 196  Q
    ||||||||||||||||||||| |||  || |||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||    
T  36582901 tgttaaatcaaagaactttatttttaataaatgtaagacactttatttatgtttttgtggagtcaatgatctttgttgttattgtaatgtatgaatatta 36583000  T
Q  197 tatttt 202  Q
    | ||||    
T  36583001 tgtttt 36583006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 11481542 - 11481429
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||| || ||||||||||||||||||||||||||||| |||| | ||||| |||| | |    
T  11481542 tatgtttttgttaaatcaaagaactttatttttattaaatgtaagggagtttatttatgtttttgttgagtcaatgatttttgctattattgtaatgtgt 11481443  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  11481442 gaatattatgtttt 11481429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 13355923 - 13355815
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||||||||||||| |||||||| ||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||| |||| |||    
T  13355923 ttttgttaaatcaaataactttatttttattaaatgtatgagactttatttatgtttttgttaagtcaatgatctttgttgttgttctaatgtatggata 13355824  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  13355823 ttatgtttt 13355815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 197
Target Start/End: Original strand, 6870634 - 6870742
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| ||||||||||||||| ||| |||| ||| ||| |||||||  ||||||||||| ||||||||  |||||||||||||||||| ||| |||| |||    
T  6870634 tatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatatttttgtttggtcaatgatctttgttgtaattgtaatgtat 6870733  T
Q  189 gaatattat 197  Q
    |||||||||    
T  6870734 gaatattat 6870742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 7987213 - 7987282
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatg 164  Q
    ||||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||    
T  7987213 ttttgttaaatgaaagaactttatttttatta-atgtaagagactttatttatgtttttgttgagccaatg 7987282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 7987283 - 7987342
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttg 153  Q
    ||||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  7987283 ttttgttaaatgaaagaactttatttttattaaatgtaagagactttatttatgtttttg 7987342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 28636492 - 28636379
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||    
T  28636492 tatgtttttgttaaatcaaataactttatttttattaaatgtaagagactttatttatgtttttgttgagtcaatgatctttgtttttattgtaatgtat 28636393  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  28636392 gaatattatgtttt 28636379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 5973086 - 5972973
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||||||| |||||||| ||| ||| |||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||| |||    
T  5973086 tatgtttttgttaaatcaaataactttatttttattaaatgtaagagactttatttatgtattttttgagtcaatgatcttttttgttattgtaatgtat 5972987  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  5972986 gaatattatgtttt 5972973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 23809680 - 23809782
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||| ||||| ||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||| |||    
T  23809680 tatgtttttgttaaatcaaagaattttatttttattaaatgtaagggactttttttatgtttttgttgagtcaatgatctttgttgttattgtaatgtat 23809779  T
Q  189 gaa 191  Q
    |||    
T  23809780 gaa 23809782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 38440446 - 38440559
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||| |||||||||||||| |||| ||| ||| ||| |||  |||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  38440446 tatgttttttttaaatcaaagaacattatttttattaaatgcaaggaactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtat 38440545  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  38440546 gaatattatgtttt 38440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 2944080 - 2944193
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| |||||||||||||||||||||||||||| ||| |||||||| || |||||| ||||||||| |||||||||||||||||||||||| ||||  ||    
T  2944080 tatgcttttgttaaatcaaagaactttatatttattaaatgtaagaaacattatttttgtttttgtcgagtcaatgatctttgttgttattgtaatgcat 2944179  T
Q  189 gaatattatatttt 202  Q
    | ||| ||||||||    
T  2944180 ggatactatatttt 2944193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 7767184 - 7767084
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    |||||||||||||||||||||||| ||| ||| |||||| ||| ||||| ||||||||||||||||||||||| |||||||||||| |||| ||||||||    
T  7767184 ttttgttaaatcaaagaactttatgtttattaaatgtaaaagattttatgtatgtttttgttgagtcaatgatttttgttgttattgtaatctatgaata 7767085  T
Q  194 t 194  Q
    |    
T  7767084 t 7767084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 11039196 - 11039304
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    |||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||||  || |||||||||| |||||||| |||| ||||||||    
T  11039196 ttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttgtgtttttgtttcgttaatgatctttattgttattgtaatctatgaata 11039295  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  11039296 ttatgtttt 11039304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 25502228 - 25502153
Alignment:
Q  127 atgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||    
T  25502228 atgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttaatgtaatgtatgaatattatatttt 25502153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 30541496 - 30541604
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||| || ||||||||||||||| ||| ||| |||||| |||||| |||||||||||| || ||||||||||||||||||||||| |||| ||||||||    
T  30541496 ttttgatatatcaaagaactttatttttattaaatgtaatagacttgatttatgtttttcttaagtcaatgatctttgttgttattgtaatgtatgaata 30541595  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  30541596 ttatgtttt 30541604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 190
Target Start/End: Complemental strand, 33189508 - 33189415
Alignment:
Q  95 tttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatga 190  Q
    ||||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||| |||||    
T  33189508 tttgttaaatcaaagaactttatttttattaaatgtaag-gactttatttatgtttttgttgagtcaatgatcttt-ttgttattgtaatgtatga 33189415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 197
Target Start/End: Complemental strand, 36298895 - 36298792
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    |||||| ||||||||||||||||| | | ||| || |||   |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  36298895 ttttgtcaaatcaaagaactttatttgtattaaatataaagtactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatatatggata 36298796  T
Q  194 ttat 197  Q
    ||||    
T  36298795 ttat 36298792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 1053128 - 1053236
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    |||||| |||| |||||||||||| ||| ||| ||| |||  | |||||||||||||||||||||| ||||||||||||||||||  |||| ||||||||    
T  1053128 ttttgtcaaatgaaagaactttatttttattaaatgcaaggaattttatttatgtttttgttgagttaatgatctttgttgttatcgtaatgtatgaata 1053227  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  1053228 ttatgtttt 1053236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 31457384 - 31457303
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgt--tacatgtaagagactttatttatgtttttgttgagtcaatgatctttgtt 173  Q
    |||||||||||||||||||||| ||||| |  || || ||||  ||||||||||||||||||||||||||||||||||||||    
T  31457384 ttttgttaaatcaaagaactttttatttttattaaatataaggaactttatttatgtttttgttgagtcaatgatctttgtt 31457303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 22519204 - 22519316
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| |||||||||||||||||||||||  ||| ||| ||||||   |||||||||||| ||| ||||||||||||| |||||||||| || |||| |||    
T  22519204 tatgcttttgttaaatcaaagaactttacttttattaaatgtaatgaactttatttatg-tttcgttgagtcaatgaactttgttgtttttgtaatgtat 22519302  T
Q  189 gaatattatatttt 202  Q
      ||||||| ||||    
T  22519303 agatattatgtttt 22519316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 179
Target Start/End: Original strand, 15954686 - 15954729
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttatt 179  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  15954686 actttatttatgtttttggtgagtcaatgatctttgttgttatt 15954729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 27337046 - 27336938
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||||| |||||||||| ||||| | | ||| |||||    ||||||| ||||||||| ||||||||| ||||||||||||| ||||||| |||  |||    
T  27337046 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatctatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 27336947  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  27336946 ttatgtttt 27336938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 47925054 - 47925012
Alignment:
Q  137 ctttatttatgtttttgttgagtcaatgatctttgttgttatt 179  Q
    |||||||||||||||||||||||||| ||||||| ||||||||    
T  47925054 ctttatttatgtttttgttgagtcaaggatctttattgttatt 47925012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 40910567 - 40910604
Alignment:
Q  159 tcaatgatctttgttgttattataatatatgaatatta 196  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  40910567 tcaatgatctttgttgttattgtaatgtatgaatatta 40910604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 39207122 - 39207235
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| |||    
T  39207122 tatgtttttgttaaatcaaagaactttatttttattaaatgtaagggactttatttatgtttttgttgtgtcaatgatctttgttgttattgtaatgtat 39207221  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  39207222 gaatattatgtttt 39207235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 3926314 - 3926206
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||    
T  3926314 ttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttatgtttttgttgagtcaatgatttttgttgttattgtaatgtatgaata 3926215  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  3926214 ttatgtttt 3926206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 35188598 - 35188711
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| ||||||||||||||| |||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  35188598 tatgattttgttaaatcaaataactttatttttattaaatgtaagggactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatttat 35188697  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  35188698 gaatattatgtttt 35188711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 23429356 - 23429246
Alignment:
Q  92 gtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaa 191  Q
    ||||||||||||||||| |||||||| ||| ||| ||||||  ||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||    
T  23429356 gtttttgttaaatcaaataactttatttttattaaatgtaacggactttatttatgtttttgttgagtaaatgatctttgttgttattgtgatatatgaa 23429257  T
Q  192 tattatatttt 202  Q
    |||||| ||||    
T  23429256 tattatgtttt 23429246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 202
Target Start/End: Original strand, 42878917 - 42879012
Alignment:
Q  107 aagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||||||| ||| |||  |||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| |||||    
T  42878917 aagaactttatttttattaagtgtaagggactttatttatgtttttgttgagttaatgatctttgttgttattgtaatgtatgaatattacatttt 42879012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 26621459 - 26621391
Alignment:
Q  129 gtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattat 197  Q
    |||||| |||||||||||||||||||||||||||| || ||| |||||||| |||| ||||||||||||    
T  26621459 gtaagaaactttatttatgtttttgttgagtcaataattttttttgttattgtaatgtatgaatattat 26621391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 39800427 - 39800535
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||||| |||||||||| ||||| | | ||| |||||    ||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||  |||    
T  39800427 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 39800526  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  39800527 ttatgtttt 39800535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 2209644 - 2209546
Alignment:
Q  103 atcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||||||||||| ||| ||| || ||||  || ||| ||||||||||||||||||||||||||||| ||||||||| || || | ||||||| ||||    
T  2209644 atcaaagaactttatttttattaaatataaggaacgttaattatgtttttgttgagtcaatgatctttg-tgttattatgatgtacggatattatgtttt 2209546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 33742765 - 33742833
Alignment:
Q  136 actttatttat-gtttttgttgagtcaatgat-ctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||||||| |||||| ||||||||||||| |||| |||||||| |||| |||||||||||| ||||    
T  33742765 actttatttattgtttttattgagtcaatgattctttattgttattgtaatgtatgaatattatgtttt 33742833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 40057039 - 40056987
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||| ||||||||| ||| ||||||||| |||||| ||||    
T  40057039 actttatttatgtttttattgagtcaaggatttttgttgttgttataagatat 40056987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 42837634 - 42837606
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttat 117  Q
    |||||||||||||||||||||||||||||    
T  42837634 tatgtttttgttaaatcaaagaactttat 42837606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 89 - 190
Target Start/End: Complemental strand, 41039460 - 41039359
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  41039460 tatgtttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtat 41039361  T
Q  189 ga 190  Q
    ||    
T  41039360 ga 41039359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 23626965 - 23626855
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| |||||||||||||||||||||||||||||    |||||||  || ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23626965 tatgcttttgttaaatcaaagaactttatatttga---atgtaaggaaccttatttatgtttttgttgagtcaatgatctttgttgttattgtaatatat 23626869  T
Q  189 gaatattatatttt 202  Q
    | ||||||| ||||    
T  23626868 ggatattatgtttt 23626855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 38951747 - 38951634
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatattt-gttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatata 187  Q
    ||||||||||||||||||||||||||||| ||| | || ||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||| ||    
T  38951747 tatgtttttgttaaatcaaagaactttatttttagcta-atgtaagggactttatatatgtgtttgttgagtcaatgatctttgttgttattgtaatgta 38951649  T
Q  188 tgaatattatatttt 202  Q
    |||||||||| ||||    
T  38951648 tgaatattatgtttt 38951634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 22278439 - 22278351
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgtta 177  Q
    ||||||||||||||||||||||| ||||| ||| ||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  22278439 tatgtttttgttaaatcaaagaattttatttttattaaatgtaagggactttatttatgtttttgttaagtcaatgatctttgttgtta 22278351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 40714857 - 40714969
Alignment:
Q  90 atgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatg 189  Q
    |||||||||||||||||||||||||||| ||| ||| | |||||  || ||||||||||||||||||||||||||||||||||  ||||| |||| |||     
T  40714857 atgtttttgttaaatcaaagaactttatttttattaaaagtaaggaacattatttatgtttttgttgagtcaatgatctttgtctttattgtaatgtatt 40714956  T
Q  190 aatattatatttt 202  Q
     ||||||||||||    
T  40714957 gatattatatttt 40714969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 42555438 - 42555330
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| ||||||||||| |||||||||||| ||| ||| |||||||   ||||||||||||||||||||||||||||| ||||||||||||| |||| |||    
T  42555438 tatgcttttgttaaattaaagaactttatttttattaaatgtaaggatctttatttatgtttttgttgagtcaatgaactttgttgttattgtaatgtat 42555339  T
Q  189 gaatattat 197  Q
    | |||||||    
T  42555338 gtatattat 42555330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 8819321 - 8819429
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    |||||| |||||||| |||||||  ||| ||| |||||||  |||||||||||||||||||||| |||||||||||||||||||||||||| |||  |||    
T  8819321 ttttgtcaaatcaaataactttacttttattaaatgtaaggaactttatttatgtttttgttgaatcaatgatctttgttgttattataatgtatagata 8819420  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  8819421 ttatgtttt 8819429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 29117142 - 29117034
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||||||||| ||| |||||||| ||| ||| |||| | |||||||||||||||||||||| | ||||||||||||||| ||||| |||| ||||||||    
T  29117142 ttttgttaaataaaaaaactttatttttattaaatgtcaaagactttatttatgtttttgttaaatcaatgatctttgttattattgtaatgtatgaata 29117043  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  29117042 ttatgtttt 29117034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 43624541 - 43624426
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatg--tttttgttgagtcaatgatctttgttgttattataatat 186  Q
    |||| |||||||||||||||||||||||| ||| ||| ||||||| | ||||||| |||  ||||| || ||||||||||||||||||||||| ||||||    
T  43624541 tatgcttttgttaaatcaaagaactttatttttattaaatgtaaggggctttattaatggttttttttttagtcaatgatctttgttgttattgtaatat 43624442  T
Q  187 atgaatattatatttt 202  Q
    ||| | ||||| ||||    
T  43624441 atggaaattatgtttt 43624426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 51357289 - 51357182
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    |||||| | |||||| |||||||| ||| ||| |||||||  |||| |||||||||| |||||||||||| ||||||||||||||| |||| |||| |||    
T  51357289 ttttgtcatatcaaataactttatttttattaaatgtaaggaactt-atttatgtttctgttgagtcaataatctttgttgttattgtaatgtatggata 51357191  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  51357190 ttatgtttt 51357182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 17120334 - 17120400
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    |||||||||| ||||||||||||||||||||| ||||||||||| |||| |||| ||||||| ||||    
T  17120334 actttatttaggtttttgttgagtcaatgatcattgttgttattgtaatgtatggatattatgtttt 17120400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 19841808 - 19841753
Alignment:
Q  148 tttttgttgagtcaatgatctttgttgttattataatatatgaatattatattttc 203  Q
    |||||||||||||||||||||||||||||||| |||| || | ||||||| |||||    
T  19841808 tttttgttgagtcaatgatctttgttgttattgtaatgtacggatattatgttttc 19841753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 36464840 - 36464920
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgt 175  Q
    |||||| |||||||| |||||||| ||| ||| |||||||  |||| |||||||||||| |||||||||| |||||| ||||    
T  36464840 ttttgtcaaatcaaataactttatttttattaaatgtaaggaactt-atttatgtttttattgagtcaataatctttattgt 36464920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 40571958 - 40572025
Alignment:
Q  136 actttatttatgtttttg-ttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    |||||||||||||||||  ||||||||| ||||||||||||| ||||||| |||  ||||||| ||||    
T  40571958 actttatttatgttttttattgagtcaaggatctttgttgttgttataatctatcgatattatgtttt 40572025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 13807670 - 13807557
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  13807670 tatgtttttgctaaatcaaagaactttatttttattgaatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtat 13807571  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  13807570 gaatattatgtttt 13807557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 5704728 - 5704615
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||||||| |||||||| ||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| |||    
T  5704728 tatgtttttgttaaatcaaataactttatttttattaaatgtaagtgactttatttatatttttgttgagtcaatgatctttgttgttattgtaatgtat 5704629  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  5704628 gaatattatgtttt 5704615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 31575946 - 31576059
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||||||| |||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||    
T  31575946 tatgtttttgttaaatcaaaaaactttatttttattaaatgtaagggactttatttatgtttttgttgagtcaatgatctttgttattattgtaatgtat 31576045  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  31576046 gaatattatgtttt 31576059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 5110329 - 5110220
Alignment:
Q  93 tttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaat 192  Q
    |||||||||||||||| |||||||| ||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  5110329 tttttgttaaatcaaataactttatttttattaaatgtaagggacattatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtatgaat 5110230  T
Q  193 attatatttt 202  Q
    ||||| ||||    
T  5110229 attatgtttt 5110220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 5938849 - 5938740
Alignment:
Q  93 tttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaat 192  Q
    |||||||||||||||| |||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  5938849 tttttgttaaatcaaataactttatttttattaaatgtaagggactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtatgaat 5938750  T
Q  193 attatatttt 202  Q
    | ||| ||||    
T  5938749 actatgtttt 5938740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 45151247 - 45151356
Alignment:
Q  93 tttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaat 192  Q
    ||||||||||||||||||| ||||| ||| ||| ||||||| |||||| |||||||||||||||| ||||||||||||||||||||| |||| |||||||    
T  45151247 tttttgttaaatcaaagaattttatttttattaaatgtaagggactttgtttatgtttttgttgaatcaatgatctttgttgttattgtaatgtatgaat 45151346  T
Q  193 attatatttt 202  Q
    ||||| ||||    
T  45151347 attatgtttt 45151356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 13626323 - 13626414
Alignment:
Q  93 tttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataat 184  Q
    ||||||||||||| ||||||||||| ||| ||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  13626323 tttttgttaaatcgaagaactttatttttattaaatgttagggactttatttatgtttttgttgagtcaatgatctttggtgttattgtaat 13626414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 45458442 - 45458503
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattat 197  Q
    |||||||||||||||||||||| ||||||||||||||||||||  |||| |||| |||||||    
T  45458442 actttatttatgtttttgttgaatcaatgatctttgttgttatggtaatgtatggatattat 45458503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 42625039 - 42625147
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||||| |||||||||| ||||| | | ||| |||||    ||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||  |||    
T  42625039 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 42625138  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  42625139 ttatgtttt 42625147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 48379090 - 48379191
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  48379090 tatgtttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtat 48379189  T
Q  189 ga 190  Q
    ||    
T  48379190 ga 48379191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 11894413 - 11894302
Alignment:
Q  91 tgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatga 190  Q
    |||||||||||||||||| |||||||| ||| ||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11894413 tgtttttgttaaatcaaataactttatttttattaaatgtaagcaactttatttatgtttttgttgagtcaatgatctttgttgttattataatgtatga 11894314  T
Q  191 atattatatttt 202  Q
    ||||||| ||||    
T  11894313 atattatgtttt 11894302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 85 - 202
Target Start/End: Original strand, 31292756 - 31292870
Alignment:
Q  85 tacgtatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataat 184  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||   ||||||||||||||    
T  31292756 tacgtatgtttttgttaaatcaaataactttatttttgttacatgtaagggactttatttatgtttttgctgagtcaatgatc---gttgttattataat 31292852  T
Q  185 atatgaatattatatttt 202  Q
     |||||||||||| ||||    
T  31292853 gtatgaatattatgtttt 31292870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 36728755 - 36728866
Alignment:
Q  91 tgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatga 190  Q
    |||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||     
T  36728755 tgtttttgttaaatcaaataactttatttttcttaaatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtgtgg 36728854  T
Q  191 atattatatttt 202  Q
    ||||||| ||||    
T  36728855 atattatgtttt 36728866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 47140911 - 47140798
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||| || |||| |||    
T  47140911 tatgcttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttatgtttttgttgagtcaatgatttttgttgttgttgtaatgtat 47140812  T
Q  189 gaatattatatttt 202  Q
    | ||||||| ||||    
T  47140811 gtatattatgtttt 47140798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 29678324 - 29678432
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    |||||||||||||||||||||||| ||| ||| ||||||| || |||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||    
T  29678324 ttttgttaaatcaaagaactttatttttattaaatgtaagggaatttatttatgattttgttgagtcaatgatctttgttgttattgtaatgtatgaata 29678423  T
Q  194 ttatatttt 202  Q
     ||| ||||    
T  29678424 atatgtttt 29678432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 17562786 - 17562899
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||||||| |||||||| ||| ||| | ||  | |||||||||| ||||||||||| |||||||||||||||||||||| |||| |||    
T  17562786 tatgtttttgttaaatcaaataactttatttttattaaacgtcggggactttatttctgtttttgttgggtcaatgatctttgttgttattgtaatgtat 17562885  T
Q  189 gaatattatatttt 202  Q
    | ||||||| ||||    
T  17562886 gtatattatgtttt 17562899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 31585233 - 31585346
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||| ||| |||||||| ||| ||| | ||  | |||||||||||||||||||||| |||||||||||||||||||||| |||| |||    
T  31585233 tatgtttttgttaaattaaataactttatttttattaaacgtcggggactttatttatgtttttgttgggtcaatgatctttgttgttattgtaatgtat 31585332  T
Q  189 gaatattatatttt 202  Q
    | ||||||| ||||    
T  31585333 gtatattatgtttt 31585346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 38264380 - 38264446
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||    
T  38264380 actttatttatatttttgttgagtcaatgatctttgttgttattgtaatgtatgaatattatgtttt 38264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 25987482 - 25987400
Alignment:
Q  119 tttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||| || ||||| |||||||||||||||||||||||| |||||||||| |||||||| |||| |||||||||||| ||||    
T  25987482 tttgttatatctaaga-actttatttatgtttttgttgagttaatgatcttttttgttattttaatgtatgaatattatgtttt 25987400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 19884459 - 19884523
Alignment:
Q  138 tttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||||| |||||||||||||||||||||||||| ||||| |||| |||||||||||| ||||    
T  19884459 tttatttatatttttgttgagtcaatgatctttgttattattgtaatgtatgaatattatgtttt 19884523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 2191843 - 2191891
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttattataat 184  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  2191843 actttatttatgtttttgttgagtcaatgatttttgttgttattgtaat 2191891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 52252757 - 52252714
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttatt 179  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  52252757 actttatttatgtttttattgagtcaaagatctttgttgttatt 52252714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 25294014 - 25294076
Alignment:
Q  140 tatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||||||||| ||||||||| ||||||||||||| ||||||| |||  ||||||| ||||    
T  25294014 tatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgatattatgtttt 25294076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 8576875 - 8576762
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||||||| |||||||| ||| ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  8576875 tatgtttttgttaaatcaaataactttatttttattaaattgaagagactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtat 8576776  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  8576775 gaatattatgtttt 8576762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 195
Target Start/End: Complemental strand, 10788601 - 10788495
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| |||||||||||||||||| ||||| ||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||    
T  10788601 tatgcttttgttaaatcaaagaaatttatttttattatatgtaagagactttatttatgtttttgttgactcaatgatctttgttgttattgtaatgtat 10788502  T
Q  189 gaatatt 195  Q
    |||||||    
T  10788501 gaatatt 10788495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 35167296 - 35167404
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||||||||||||| ||| |||| ||| ||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||| || | |||    
T  35167296 ttttgttaaatcaaataacattatttttattaaatgtgagagactttatttatgtttttgttaagtcaatgatctttgttgttattgtaatgtacggata 35167395  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  35167396 ttatgtttt 35167404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 7622484 - 7622403
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatcttt 170  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||  ||| ||||||||||||||||||||||||||||||||    
T  7622484 tatgtttttgttaaatcaaagaactttatctttattaaatgtaaaggacattatttatgtttttgttgagtcaatgatcttt 7622403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 28582265 - 28582153
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||||||  |||||||||||||||| | ||||||||||| ||||||| |||| |||| |||    
T  28582265 tatgtttttgttaaatcaaagaaatttatatttattaaatgtaagaagctttatttatgtttttatcgagtcaatgatttttgttgctattttaat-tat 28582167  T
Q  189 gaatattatatttt 202  Q
    | ||||||| ||||    
T  28582166 ggatattatgtttt 28582153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 7245534 - 7245600
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||    
T  7245534 actttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtatgaatattatgtttt 7245600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 34433207 - 34433316
Alignment:
Q  93 tttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaat 192  Q
    |||||||||||| ||| |||||||| | | ||| |||||||||||||||||||  |||||||| ||||||||||||||||||||||| |||| |||  ||    
T  34433207 tttttgttaaattaaataactttatttgtattaaatgtaagagactttatttacatttttgttaagtcaatgatctttgttgttattgtaatgtatagat 34433306  T
Q  193 attatatttt 202  Q
    ||||| ||||    
T  34433307 attatgtttt 34433316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 642103 - 642171
Alignment:
Q  127 atgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatatt 195  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  642103 atgtaaaagactttatttatgtttttgttaagtcaatgatctttgttgttattgtaatgtatgaatatt 642171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 202
Target Start/End: Original strand, 10408977 - 10409081
Alignment:
Q  98 gttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattat 197  Q
    |||||||||||||| |||| || | | | |||||||   ||||| ||||||||||||| |||||||||||| |||||||||||||||  |||||||||||    
T  10408977 gttaaatcaaagaagtttaaatatatcaaatgtaaggagctttagttatgtttttgttaagtcaatgatctatgttgttattataatgcatgaatattat 10409076  T
Q  198 atttt 202  Q
    |||||    
T  10409077 atttt 10409081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 5295333 - 5295220
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||||||||||||||||||| |||||||| ||  ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  5295333 tatgtttttgttaaatcaaataactttattttaattaaatgtaagggactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtat 5295234  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  5295233 gaatattatgtttt 5295220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 25874708 - 25874821
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||| ||| |||||||||||||| |||||||| ||||||||||||||||| |||| |||    
T  25874708 tatgtttttgttaaatcaaagaactttatttttattaaatgtaagtgacattatttatgtttttattgagtcattgatctttgttgttattgtaatgtat 25874807  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  25874808 gaatattatgtttt 25874821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 21288222 - 21288114
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| |||||||||||||||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |||    
T  21288222 tatgattttgttaaatcaaagaactttattttaattaaatgtaagagactttatttatgtttttgttgagtcaatgatctttattgttagtgtaatgtat 21288123  T
Q  189 gaatattat 197  Q
    |||||||||    
T  21288122 gaatattat 21288114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 3778912 - 3779025
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| |||| |||||||||| |||||||| ||| ||| || |||| ||||||||||||||||||||||||||||||||||||||| ||||| || | |||    
T  3778912 tatgctttttttaaatcaaataactttatttttattaaatataagggactttatttatgtttttgttgagtcaatgatctttgttattattgtagtgtat 3779011  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  3779012 gaatattatgtttt 3779025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 27926637 - 27926739
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||||||||          ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||    
T  27926637 tatgtttttgttaaatcaaagaacttta----------atgtaagagactttatttatgtttt-gttgagtcaatgatctttgttgttattgtaatgtat 27926725  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  27926726 gaatattatgtttt 27926739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 13826033 - 13825920
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    |||| ||||||||||| |||||||||||| ||| ||  ||||||| ||| |||||||| |||||||| ||||| ||||||||||||||||| |||| |||    
T  13826033 tatgcttttgttaaattaaagaactttatttttatttaatgtaagtgacattatttatatttttgttaagtcagtgatctttgttgttattgtaatgtat 13825934  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  13825933 gaatattatgtttt 13825920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 36584476 - 36584410
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||    
T  36584476 actttatttatgtttttcttgaatcaatgatctttgttgttattataatgtatgaatattatatttt 36584410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 48251717 - 48251783
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||| ||||    
T  48251717 actttatttatgtttttgttgaatcaatgatctttgttgttattgtaatgtatggatattatgtttt 48251783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 12149138 - 12149030
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||||| |||||| ||| ||||| | ||||| |||||    ||||||||||||||||| ||||||||||||||||||||||| ||||||| |||  |||    
T  12149138 ttttgtttaatcaatgaattttatttctgttaaatgtagtgaactttatttatgtttttattgagtcaatgatctttgttgttgttataatctatcgata 12149039  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  12149038 ttatgtttt 12149030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 26188005 - 26187934
Alignment:
Q  131 aagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaatattatatttt 202  Q
    |||| |||||| ||||||||||||||||  |||||||||| ||||||||  ||| |||||||||||||||||    
T  26188005 aagaaactttaattatgtttttgttgaggtaatgatctttattgttattgcaatgtatgaatattatatttt 26187934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 13084754 - 13084795
Alignment:
Q  138 tttatttatgtttttgttgagtcaatgatctttgttgttatt 179  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  13084754 tttatttatgtttttgttgagtcattgatctttgttgttatt 13084795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 32847650 - 32847582
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttga 157  Q
    |||||||||||| |||||||||||||| | ||||||| |||| |   ||||||||||||||||||||||    
T  32847650 tatgtttttgttgaatcaaagaactttgtttttgttaaatgttatgaactttatttatgtttttgttga 32847582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 37341418 - 37341498
Alignment:
Q  93 tttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgtt 173  Q
    |||||||| |||||| ||||||||| ||||||| |||| | | ||||||||||||||||| |||| |||| || |||||||    
T  37341418 tttttgttgaatcaaggaactttatttttgttaaatgtgataaactttatttatgttttttttgaatcaaggaactttgtt 37341498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 6893 - 7006
Alignment:
Q  89 tatgtttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatat 188  Q
    ||||||||||||||||||||||| ||||| ||| ||| ||||||  ||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  6893 tatgtttttgttaaatcaaagaattttatttttattatatgtaatggacctcatttatgtttttgttgagtcaatgatctttgttgttattgtaaaatat 6992  T
Q  189 gaatattatatttt 202  Q
    ||||||||| ||||    
T  6993 gaatattatgtttt 7006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 22168 - 22060
Alignment:
Q  94 ttttgttaaatcaaagaactttatatttgttacatgtaagagactttatttatgtttttgttgagtcaatgatctttgttgttattataatatatgaata 193  Q
    ||||||| |||||||||| ||||| | | ||| |||||    ||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||  |||    
T  22168 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 22069  T
Q  194 ttatatttt 202  Q
    |||| ||||    
T  22068 ttatgtttt 22060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 175
Target Start/End: Complemental strand, 66619 - 66580
Alignment:
Q  136 actttatttatgtttttgttgagtcaatgatctttgttgt 175  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  66619 actttatttatgtttttgttgagtcaatgatctttgttgt 66580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 62527 - 62490
Alignment:
Q  159 tcaatgatctttgttgttattataatatatgaatatta 196  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  62527 tcaatgatctttgttgttattgtaatgtatgaatatta 62490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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