View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10226_low_27 (Length: 240)
Name: NF10226_low_27
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10226_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 78 - 217
Target Start/End: Complemental strand, 37876533 - 37876391
Alignment:
| Q |
78 |
agtactgaaatagagcagagtaaacaaagcaa--tctagatcaatatattatacctcacatgctatcagttag-gttaaatcaaaactttaatttaccat |
174 |
Q |
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|||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |
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| T |
37876533 |
agtactgaaatagagcagagaaaagaaagcaaaatctagatcaataaattatacctcacatgctaccagttagcgttaaatcaaaactataatttaccat |
37876434 |
T |
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| Q |
175 |
ttgagtcttttagacattccatgtctcaaaatctataataata |
217 |
Q |
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| T |
37876433 |
tggagtcttttagacatttcatgtctcaaaatctataataata |
37876391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 78 - 217
Target Start/End: Original strand, 23895148 - 23895290
Alignment:
| Q |
78 |
agtactgaaatagagcagagtaaacaaagcaa--tctagatcaatatattatacctcacatgctatcagttag-gttaaatcaaaactttaatttaccat |
174 |
Q |
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|||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |
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| T |
23895148 |
agtactgaaatagagcagagaaaagaaagcaaaatctagatcaataaattatacctcacatgctaccagttagcgttaaatcaaaactataatttaccat |
23895247 |
T |
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| Q |
175 |
ttgagtcttttagacattccatgtctcaaaatctataataata |
217 |
Q |
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| T |
23895248 |
tggagtcttttagacatttcatgtctcaaaatctataataata |
23895290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 215
Target Start/End: Original strand, 18138595 - 18138786
Alignment:
| Q |
25 |
ttcattttaatctctatgtaacatgcatgtataaccatacacttaaacacgaaagtactgaaatagagcagagtaaacaaagcaatctagatcaatatat |
124 |
Q |
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|||||||||||||| |||||| |||||||||| | |||| |||| || | || | ||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
18138595 |
ttcattttaatctcaatgtaagatgcatgtatgatcataaacttcaatatgagaatacataaatagagcagagtaaacaaagcaatctagatcaataaat |
18138694 |
T |
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| Q |
125 |
tatacctcacatgctatcagttag-gttaaatcaaaactttaatttaccatttgagtcttttagacattccatgtctcaaaatctataataa |
215 |
Q |
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|||| ||| ||||||| | |||| ||| |||||||||| |||||| |||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
18138695 |
tataactcgcatgctaccgattagtgttgaatcaaaactacaatttagcattggagtcttttagagattccatgtctcaaaatctataataa |
18138786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 18097692 - 18097556
Alignment:
| Q |
89 |
agagcagagtaaacaaagcaatctagatcaatatattatacctcacatgctatcagttag-gttaaatcaaaactttaatttaccatttgagtcttttag |
187 |
Q |
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||||||||||||||||||||||||||||||||| |||| | ||| ||||||| || |||| ||| |||||||||| ||||||| | || ||||| |||| |
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| T |
18097692 |
agagcagagtaaacaaagcaatctagatcaataaattagaactcgcatgctagcaattagtgttgaatcaaaactataatttagcgttgaagtctattag |
18097593 |
T |
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| Q |
188 |
acattccatgtctcaaaatctataataatagattctt |
224 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
18097592 |
acattccatgtctcaaaatctataataaaggattctt |
18097556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 18107202 - 18107148
Alignment:
| Q |
19 |
ccttacttcattttaatctctatgtaacatgcatgtataaccatacacttaaaca |
73 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18107202 |
ccttacttcattttaatctctatgtaacatgcatgtataaccatacacttaaaca |
18107148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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