View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10226_low_29 (Length: 231)
Name: NF10226_low_29
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10226_low_29 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 2062544 - 2062344
Alignment:
| Q |
14 |
aagaaacataacagtcaactactatattttataaatcaacattataaagtaaaaacgtattgagctactgcataaatttgatgccagtctcccatcttcc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2062544 |
aagaaacataacagtcaactactatattttataaatcaacattataaagtaaaaacgtattgagctactgcataaatttgataccagtctcccatcttcc |
2062445 |
T |
|
| Q |
114 |
gcatacagaacagctcctgcaccagctggtcctggatttccacttaatgcaccatcaaaccgaacgatacacaaaccctgcaaataagatatagaacttt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2062444 |
gcatacagaacagctcctgcaccagctggtccaggatttccacctgatgcaccatcaaaccgaacgatacacaaaccctgcaaataagatatagaacttt |
2062345 |
T |
|
| Q |
214 |
g |
214 |
Q |
| |
|
| |
|
|
| T |
2062344 |
g |
2062344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 2058118 - 2057917
Alignment:
| Q |
14 |
aagaaacataacagtcaactactatattttataaatcaacattataaagtaaaaacgtattgagctactgcataaatttgatgccagtctcccatcttcc |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || |||||| ||||||| ||||| | |||||| | ||||| || | |||||||||| |
|
|
| T |
2058118 |
aagaaacataacagtcagctactatattttataaatcaccaatataaaataaaaaccaattgaattgttgcatatagttgataccttccgcccatcttcc |
2058019 |
T |
|
| Q |
114 |
gcatacagaacagctcctgcaccagctggtcctggatttccacttaatgcaccatcaaaccgaacgatacacaaaccctgcaaataagatatagaacttt |
213 |
Q |
| |
|
||| ||| |||| ||||||| ||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2058018 |
gcaaacataacaactcctgccccagctggtccaggatttccactcgatacaccaccaaaccgaacgatacacaaaccctgcaaataagatatagcacttt |
2057919 |
T |
|
| Q |
214 |
ga |
215 |
Q |
| |
|
|| |
|
|
| T |
2057918 |
ga |
2057917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 2054007 - 2053848
Alignment:
| Q |
14 |
aagaaacataacagtcaactactatattttataaatcaacattataaagtaaaaacgtattgagctactgcataaatttgatgccagtctcccatcttcc |
113 |
Q |
| |
|
|||||||||| | |||| |||| |||||||||||||||| | |||||| | ||||| ||||| || || ||||||||||| || |||||||||||||| |
|
|
| T |
2054007 |
aagaaacatatcggtcagctacaatattttataaatcaaaaatataaaattaaaaccaattgaactgttgaataaatttgataccggtctcccatcttcc |
2053908 |
T |
|
| Q |
114 |
gcatacagaacagctcctgcaccagctggtcctggatttccacttaatgcaccatcaaac |
173 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||| | |||||||||||||| |
|
|
| T |
2053907 |
gcatacagaatagctcctgcaccagctggtccaggatttccaatcgatgcaccatcaaac |
2053848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 206
Target Start/End: Complemental strand, 2047383 - 2047259
Alignment:
| Q |
82 |
tgcataaatttgatgccagtctcccatcttccgcatacagaacagctcctgcaccagctggtcctggatttccacttaatgcaccatcaaaccgaacgat |
181 |
Q |
| |
|
|||| |||||| || |||| | || |||||| |||| || ||||||||||||||||||||||| ||||| |||||| |||||||||||||| || | | |
|
|
| T |
2047383 |
tgcaaaaatttaataccagacaccaatcttcatcatatagtacagctcctgcaccagctggtcccggattcccacttgatgcaccatcaaacataaggtt |
2047284 |
T |
|
| Q |
182 |
acacaaaccctgcaaataagatata |
206 |
Q |
| |
|
||| |||| ||||||||||| |||| |
|
|
| T |
2047283 |
acaaaaacgctgcaaataaggtata |
2047259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 2041812 - 2041734
Alignment:
| Q |
125 |
agctcctgcaccagctggtcctggatttccacttaatgcaccatcaaaccgaacgatacacaaaccctgcaaataagat |
203 |
Q |
| |
|
||||| ||||||||||| ||| |||||||||||| | ||||||||||| ||| |||||| ||| ||||||||||||| |
|
|
| T |
2041812 |
agctcttgcaccagctgatccaggatttccacttgacgcaccatcaaattgaaggatacaagaactctgcaaataagat |
2041734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 2088238 - 2088190
Alignment:
| Q |
125 |
agctcctgcaccagctggtcctggatttccacttaatgcaccatcaaac |
173 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||| ||||||||| |
|
|
| T |
2088238 |
agctcctgcaccagctggtccgggatttccacgcgatgcgccatcaaac |
2088190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University