View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10226_low_3 (Length: 499)
Name: NF10226_low_3
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10226_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 487
Target Start/End: Complemental strand, 54606379 - 54605913
Alignment:
| Q |
19 |
aatctacttgtaacttctttcttttcttctcaccaaaacagaagacaatcaagatacacaacattgtttttgttcaatagtttcaagaggctgnnnnnnn |
118 |
Q |
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| T |
54606379 |
aatctacttgtaacttctttcttttcttctcaccaaaacagaagacaatcaagatacacaacattgtttttgttcaatagtttcaagaggctgttttttt |
54606280 |
T |
|
| Q |
119 |
n-agttttggacagattattctgctttttctgctgaatttgtacacaatttttctgcttttaggagatgttcagttttgt--agaccttgcagtttgtgg |
215 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
54606279 |
ttagttttggacagatt---------tttctgctgaatttgtacacaatttttctgctttgaggagatgttcagttttgtgtagaccttgcagtttgtgg |
54606189 |
T |
|
| Q |
216 |
tgcttcaatgcgtcactagtttcaattgtagatagtaacttgttataccatagccatgttaacgaattag----tctttctttcattgcatatgacaagt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
54606188 |
tgcttcaatgcgtcactagtttcaattgtagatagtaacttgttataccatagccatgttaacgaattagctagtctttctttcattccatatgacaagt |
54606089 |
T |
|
| Q |
312 |
aacctttgaatgagttaaagaattagtcaatttcctggtcatttttatgaattgttcttgggtaactaaagccagttatttaacttacctagtgaatttg |
411 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||| |
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| T |
54606088 |
aacctttgaatgagttaaagaattagccaatttcttggtcatttttatgaattgttcttgggtaactaaagccatttatttagctaggctagtgaatttg |
54605989 |
T |
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| Q |
412 |
agccaattatttatttacacgcaccataagtaactatgacaggaaatttaagcatgctagtaaattgtggcctttg |
487 |
Q |
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| T |
54605988 |
agccaattatttatttacacgcaccataagtaactatgacagggaatttaagcatgctagtaaattgtggcctttg |
54605913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 34386447 - 34386501
Alignment:
| Q |
219 |
ttcaatgcgtcactagtttcaattgtagatagtaa-cttgttataccatagccat |
272 |
Q |
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||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
34386447 |
ttcaatgtgtcactagtttcaattgtggatagtaaccttgttataccatagccat |
34386501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 40193201 - 40193255
Alignment:
| Q |
21 |
tctacttgtaacttctttcttttcttctcaccaaaacagaagacaatcaagatac |
75 |
Q |
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| T |
40193201 |
tctacttgtaacttctttattttcttctcgacaaaacagaaaacaatcaaaatac |
40193255 |
T |
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