View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10226_low_34 (Length: 213)

Name: NF10226_low_34
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10226_low_34
NF10226_low_34
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-180)||(81770-81950)
[»] chr1 (1 HSPs)
chr1 (28-109)||(30224230-30224311)
[»] chr6 (1 HSPs)
chr6 (127-207)||(4435512-4435592)
[»] chr3 (1 HSPs)
chr3 (127-207)||(46595246-46595326)
[»] chr8 (1 HSPs)
chr8 (127-180)||(38016579-38016632)
[»] chr5 (1 HSPs)
chr5 (127-207)||(37719488-37719567)


Alignment Details
Target: scaffold0007 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 81950 - 81770
Alignment:
Q  1 ttacccctgccctctccctttgtggctgcacacacact--atcaatgatttttctgcacacttacttctattgttggattttatttgacaggagccagaa 98  Q
    |||||||||||||||||| | |||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  81950 ttacccctgccctctcccct-gtggctgcacacacactctatcaatgatttttgtgcacacttacttctattgttggattttatttgacaggagccaaaa 81852  T
Q  99 tcacaaaagaatatcacatgaatgccaaatcttgaaatcatctacatctcgatctgttggtttcaacccatgaaaacacatt 180  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81851 ccacaaaagaatatcacatgaatgccaaatcttgaaatcatctacatctcgatctgttggtttcaacccatgaaaacacatt 81770  T

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Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 30224230 - 30224311
Alignment:
Q  28 gcacacacactatcaatgatttttctgcacacttacttctattgttggattttatttgacaggagccagaatcacaaaagaa 109  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30224230 gcacacactctatcactgatttttctgcaaacttacttctattgttggattttatttgacaggagccagaaccacaaaagaa 30224311  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 4435512 - 4435592
Alignment:
Q  127 atcttgaaatcatctacatctcgatctgttggtttcaacccatgaaaacacattaaatttgttgtcctattttcatctctc 207  Q
    |||| |||||| ||| ||||||||||||||||||| |||||||||||| ||||| | |||| || |||| |||||| ||||    
T  4435512 atctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcatttctc 4435592  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 46595326 - 46595246
Alignment:
Q  127 atcttgaaatcatctacatctcgatctgttggtttcaacccatgaaaacacattaaatttgttgtcctattttcatctctc 207  Q
    |||| |||||| ||| ||||||||||||||||||| |||||||||||| ||||| | |||| || |||| |||||| ||||    
T  46595326 atctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcatttctc 46595246  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 38016632 - 38016579
Alignment:
Q  127 atcttgaaatcatctacatctcgatctgttggtttcaacccatgaaaacacatt 180  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||| |||| |||||    
T  38016632 atcttaaaatcatctgcatcttgatctgttggtttcaacccattaaaatacatt 38016579  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 37719567 - 37719488
Alignment:
Q  127 atcttgaaatcatctacatctcgatctgttggtttcaacccatgaaaacacattaaatttgttgtcctattttcatctctc 207  Q
    |||| |||||| ||| ||||||||||||||||||| || ||||||||| ||||| | |||| || |||| |||||| ||||    
T  37719567 atctcgaaatcctctgcatctcgatctgttggttttaa-ccatgaaaaaacattgattttgctgacctaatttcatttctc 37719488  T

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