View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10226_low_4 (Length: 462)
Name: NF10226_low_4
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10226_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 51 - 444
Target Start/End: Original strand, 3605498 - 3605888
Alignment:
| Q |
51 |
gatgaaattgtgaataaactcatagcattcaggtttacagcaaaataagcataatgcatacaattgtgacaaaatacaggtgtctggaatatctagcata |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
3605498 |
gatgaaattgtgaataaactcatagcattcaagtttacagcaaaataagcataatgcatacaattgtgacaaaatacaggtg-ctggaatatccagcata |
3605596 |
T |
|
| Q |
151 |
tggatggatctaacgttgaagacacaaaagtcattctttgaatttttaatagacaccaaaagaagaaaatccgccaatgaccctattgaataccgcaata |
250 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3605597 |
tggatggatctgacgttgaagacgcaaaaatcattctttgaatttttaatagacatcaaatgaagaaaatccgccaatgaccttattgaataccgcaata |
3605696 |
T |
|
| Q |
251 |
agacgagaaatcaaattatcgaaccaaaaagacgaagaacacaacatcgtcgcatttacacgacaaaacacaagaaaagccaaatctttgtgaaagaatg |
350 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3605697 |
aaacgagaaatcaaattatcgaaccaagaagacgaacaacgcaacatcgtcacatttacacgacaaaacacaagaaaagccaaatctttgtgaaagaatg |
3605796 |
T |
|
| Q |
351 |
tttgacaaaggtaactgataaatcctccttccatacatatcccaaagaatgtttgacaaaaataaccgataaattagttgaagaaaattgttcc |
444 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3605797 |
tttgacaaagataactgataaatcctccttccatacatatcctaaagaatgtttgacaaaaataaccgat--attagttgaagaaaattgttcc |
3605888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University