View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10226_low_5 (Length: 437)
Name: NF10226_low_5
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10226_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 4302337 - 4302744
Alignment:
| Q |
14 |
agaggtgataagcaaacatgatcagcaatccagaagggactaaaaccaaatccagattctccttatggaacttcattttcagtatcttcctgcctatgag |
113 |
Q |
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| T |
4302337 |
agaggtgataagcaaacatgatcagcaatccagaagggactaaaaccaaatccagattctccttatggaacttcattttcagtatcttcctgcctatgag |
4302436 |
T |
|
| Q |
114 |
ttctaattgaagagtaggattaatttatcaaagtttcagttataaacaaaaaactaaatggagtccatggtcatcaatcatattaacatttaatttcctt |
213 |
Q |
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| T |
4302437 |
ttctaattgaagagtaggattaatttatcaaagtttcagttataaacaaaaaactaaatggagtccatggtcatcaatcatattaacatttaatttcctt |
4302536 |
T |
|
| Q |
214 |
gatgggccattgacttttagactctttaatttggcaaccaattgccacttgctataaattttcaccatatttaattttgaacaattggcattattgatta |
313 |
Q |
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| T |
4302537 |
gatgggccattgacttttagactctttaatttggcaaccaattgccacttgctataaattttcaccatatttaattttgaacaattggcattattgatta |
4302636 |
T |
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| Q |
314 |
gaacggatagaatacgaaatcaagacgttgcttgagggtgggggaatgcttttatacgaagaaacaagtttggtattctaaattgttagaatttaaatgg |
413 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4302637 |
gaacggatagaatatgaaatcaagacgttgcttgagggtgggggaatgcttttatacgaagaaacaagtttggtattctaaattgttagaatttaaatgg |
4302736 |
T |
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| Q |
414 |
gatgaaca |
421 |
Q |
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| T |
4302737 |
tatgaaca |
4302744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 55810715 - 55810568
Alignment:
| Q |
14 |
agaggtgataagcaaacatgatcagcaatccagaagggactaaaaccaaatccagattctccttatggaacttcattttcagtatcttcctgcctatgag |
113 |
Q |
| |
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||||||||||||||||||||| ||||| || || |||| |||| |||||||||| |||||| |||||||||||||||||| ||||||| |||| ||| |
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| T |
55810715 |
agaggtgataagcaaacatgactagcaactcacaaaggaccaaaatcaaatccagacactccttgtggaacttcattttcagtttcttccttccta-gag |
55810617 |
T |
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| Q |
114 |
ttctaattgaagagtaggattaatttatcaaagtttcagttataaacaa |
162 |
Q |
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| |||||||| ||||| ||||||||| ||| ||||||||||||||||| |
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| T |
55810616 |
tgctaattgaggagtatgattaatttcacaaggtttcagttataaacaa |
55810568 |
T |
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