View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10226_low_6 (Length: 390)
Name: NF10226_low_6
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10226_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 30431615 - 30431999
Alignment:
| Q |
1 |
cttctaaagtcgaacaaatgactgattatgatgtgtgaaccatgtaaaactttttataccgacggtggatgaaaattaaactctttttatactgattgtg |
100 |
Q |
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| T |
30431615 |
cttctaaagtcgaacaaatgactgattatgatgtgtgaaccatgtaaaactttttataccgacggtggatgaaaattaaactctttttatattgattgtg |
30431714 |
T |
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| Q |
101 |
aatttccaatttgtatatgtttagaggccaagctaagggaaggggttatgtcaaactgaaagacggtgatattttacgtcttgcgaaattgattcttcct |
200 |
Q |
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| T |
30431715 |
aatttccaatttgtatatgtttagaggccaagctaagggaaggggttatgtcaaactgaaagacgatgatattttacgtcttgcgaaattgattcttcct |
30431814 |
T |
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| Q |
201 |
gcttcgaattttgcattttcgaagactacagagttgttctctggagaaccatccatgaccctgaaagtaattcttgcaactttggtcctattttcctgtt |
300 |
Q |
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| T |
30431815 |
gctttgaattttgcattttcaaagactacagagttgttctctggagaaccatccatgaccctgaaagtaattcttgcaactttggtcctactttcctgtt |
30431914 |
T |
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| Q |
301 |
tttgtgcaataacagaacctctttgtagtgttagttaagtctcttttttcttcttccaatcgttgcaggtagctcctttgcttct |
385 |
Q |
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| T |
30431915 |
tttgtgcaataacagaacctctttgtattgttagttaagtctcttttttcttcttccaatcgttgcaggtagctcctttgcttct |
30431999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 271
Target Start/End: Original strand, 38775454 - 38775580
Alignment:
| Q |
145 |
gttatgtcaaactgaaagacggtgatattttacgtcttgcgaaattgattcttcctgcttcgaattttgcattttcgaagactacagagttgttctctgg |
244 |
Q |
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| T |
38775454 |
gttatgtcaagattaaagaagatgatgttttgcgtcttgcaaaattgattcttcctgctttaaattttgcaatttcaaggactagagtgctattctcagg |
38775553 |
T |
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| Q |
245 |
agaaccatccatgaccctgaaagtaat |
271 |
Q |
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| T |
38775554 |
agaaccatcaatgacccttaaagtaat |
38775580 |
T |
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