View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10226_low_7 (Length: 384)
Name: NF10226_low_7
Description: NF10226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10226_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 38485843 - 38486198
Alignment:
| Q |
19 |
ctatagaggccagacactatcgcggactgttagaggaatgatgtactactataaggccctcaagcttttggcttttctagattctgcatcagaagtagag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38485843 |
ctatagaggccagacactatcgcggactgttagaggaatgatgtactactataaggccctcaagcttttggcttttctagattctgcatcagaagtagag |
38485942 |
T |
|
| Q |
119 |
atcacagaaggctcacgtgaacttgttccaacgaatcaagatattccagacggtatcaactcgcaaaagtcatcattttctgaagcaagcagtacagtaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38485943 |
atcacagaaggctcacgtgaacttgttccaacgaatcaagatattccagacggtatcaactcgcaaaagtcatcattttctgaagcaagcagtacagtaa |
38486042 |
T |
|
| Q |
219 |
gtttgttcaaaggccatgactatggaactgcattaatgaaattcacatatgtgattgcttgtcagatatatggaactcaaaaggcaagaaaggatcctca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486043 |
gtttgttcaaaggccatgactatggaactgcattaatgaaattcacatatgtgatcgcttgtcagatatatggaactcaaaaggcaagaaaggatcctca |
38486142 |
T |
|
| Q |
319 |
tgccgatgaaattttgtatttaatgaaaaacaatgaagccctaagagttgcctatg |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486143 |
tgccgatgaaattttgtatttaatgaaaaacaatgaagccctaagagttgcctatg |
38486198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 206 - 374
Target Start/End: Original strand, 30120432 - 30120603
Alignment:
| Q |
206 |
agcagtacagtaagtttgttc---aaaggccatgactatggaactgcattaatgaaattcacatatgtgattgcttgtcagatatatggaactcaaaagg |
302 |
Q |
| |
|
|||||| ||||||||||||| |||||||| || ||||| ||||| || |||||||||||||||||| ||||||||||||| ||||||||||| |||| |
|
|
| T |
30120432 |
agcagttcagtaagtttgttatttaaaggccacgagtatgggactgctttgatgaaattcacatatgtggttgcttgtcagatttatggaactcagaagg |
30120531 |
T |
|
| Q |
303 |
caagaaaggatcctcatgccgatgaaattttgtatttaatgaaaaacaatgaagccctaagagttgcctatg |
374 |
Q |
| |
|
|| |||||||| ||||| || |||||||||||| ||||||||||||||||||| || ||||||| |||| |
|
|
| T |
30120532 |
aaaagaaggatccccatgctgaggaaattttgtatctaatgaaaaacaatgaagctcttcgagttgcatatg |
30120603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 30120238 - 30120359
Alignment:
| Q |
24 |
gaggccagacactatcgcggactgttagaggaatgatgtactactataaggccctcaagcttttggcttttctagattctgcatcagaagtagagatcac |
123 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| |||||| |||||||||| | ||| | ||||| ||||||||||||||| | || || |
|
|
| T |
30120238 |
gaggccaaacactatcgcggacagttagaggaatgatgtattactatcgggccctcaagatgttgacatttctggattctgcatcagaaatggacattcg |
30120337 |
T |
|
| Q |
124 |
agaaggctcacgtgaacttgtt |
145 |
Q |
| |
|
|||||||||||| || |||||| |
|
|
| T |
30120338 |
agaaggctcacgcgagcttgtt |
30120359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University