View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10227_high_8 (Length: 278)
Name: NF10227_high_8
Description: NF10227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10227_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 44 - 264
Target Start/End: Original strand, 2615508 - 2615728
Alignment:
| Q |
44 |
aacatttaagagatattgaatttaagatatctctttgtctaatgaagctgcaaacttacctaaaaaataagttgatatatccaaattcaatagctctttg |
143 |
Q |
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| T |
2615508 |
aacatttaagagatattgaatttaagatatctctttgtctaaagaagctgcaaacttacctaaaaaataagttgatatatccaaattcaatagctctttg |
2615607 |
T |
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| Q |
144 |
tctatagaagctactaacttacctccacttaaaatttaagagatattgaatttgaatctgattaaaacaatttttaatcaaattttacttacctatgagt |
243 |
Q |
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| T |
2615608 |
tctatagaagctactaacttacctccacttaacatttaagagatattgaatttgaatctgattaaaacaatttttaaccaaattttacttacctatgagt |
2615707 |
T |
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| Q |
244 |
caaattttagattattgatgt |
264 |
Q |
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| T |
2615708 |
caaattttagattattgatgt |
2615728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2615392 - 2615438
Alignment:
| Q |
1 |
tttttatggagtatttcagcaacatgctttttagggcatgttcaaca |
47 |
Q |
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| T |
2615392 |
tttttatggagtatttcagcaacatgctttttagggcgtgttcaaca |
2615438 |
T |
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