View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10227_low_1 (Length: 672)
Name: NF10227_low_1
Description: NF10227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10227_low_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 293 - 672
Target Start/End: Complemental strand, 29122407 - 29122028
Alignment:
| Q |
293 |
taggtatattcaatattatttgtacataagacacagacgcaaatgtcttgaagatggcaacttcacatattctgtcccatatatgggccacaggaacatt |
392 |
Q |
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| T |
29122407 |
taggtatattcaatattatttgtacataagacacagacgcaaatgtcttgaagatggcaacttcacatattctgtcccatatatgggccacaggaacatt |
29122308 |
T |
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| Q |
393 |
aacatagatatatcatcacaatgaaacaaagaagaaaagaatgataccaatagttccctcttagaaattctcatactcattggccattgcaaatgttctt |
492 |
Q |
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| T |
29122307 |
aacatagatatatcaccacaatgaaacaaagaagaaaagaatgataccaatagttccctcttagaaattttcatactcattggccattgcaaatgttctt |
29122208 |
T |
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| Q |
493 |
tctcccactcttgcacctttgcatgggtcccaattcatacataatgtacaaagtataaatagccatggatataaattgagacatatctccttgtagaaac |
592 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29122207 |
tctcccactcttgcacctttgcatgggtcccaattcatacataatgtacaaagtataaatagccatgcatataaattgagacatatctccttgtagaaac |
29122108 |
T |
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| Q |
593 |
aataaatatatacaatatcttcaatttaattcatggcttctgcatcagggttgaagcgcacagattcaataacagataac |
672 |
Q |
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| T |
29122107 |
aacaaatatatacaatatcttcaatttaattcatggcttctgcatcagggttgaagcgcacagattcaataacagataac |
29122028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 29122741 - 29122479
Alignment:
| Q |
11 |
atggacatcaatcattcaacatccttgtatgcatatgtcacatcatttataatatgtggtatcactaatttttagttnnnnnnnttcgaaggaggaccaa |
110 |
Q |
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| T |
29122741 |
atggatatcaatcattcaacattcttgtatgcatatgtcacatcatttataatatgcggcatcactaatttttagttaaaaaaatccgaaggaggaccaa |
29122642 |
T |
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| Q |
111 |
aactattaaattttaaaatacggggattaattctacaaattggtgaaaatagagtgatcagatgagtaactaattcttaaattttttaaaataattttta |
210 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
29122641 |
aactattaaattttaaaatacagggactaattctacaaattggtgaaaatagagtgatcagatcagtaactaattcttaaattttttaaaacaattttta |
29122542 |
T |
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| Q |
211 |
gtggattgataatgaattgttttatccacccattatcatccaatccatccattttgttcctcc |
273 |
Q |
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| T |
29122541 |
gtggatcgataatggattgttttatccacccattatcatccaatccatccattttgttactcc |
29122479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 6216275 - 6216217
Alignment:
| Q |
104 |
ggaccaaaactattaaattttaaaatacggggattaattctacaaattggtgaaaatag |
162 |
Q |
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| T |
6216275 |
ggaccaaaactatcgaattttaaaatagggggaccaattctgcaaagtggtgaaaatag |
6216217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 3577779 - 3577836
Alignment:
| Q |
107 |
ccaaaactattaaattttaaaatacggggattaattctacaaattggtgaaaatagag |
164 |
Q |
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| T |
3577779 |
ccaaaactgtcaaattttaaaatagggggaccaattcttcaaaatggtgaaaatagag |
3577836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 42552603 - 42552558
Alignment:
| Q |
119 |
aattttaaaatacggggattaattctacaaattggtgaaaatagag |
164 |
Q |
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| T |
42552603 |
aattttaaaatacagggaccaattctacaaaatggtgaaaatagag |
42552558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 15061528 - 15061471
Alignment:
| Q |
104 |
ggaccaaaactattaaattttaaaatacggggattaattctacaaattggtgaaaata |
161 |
Q |
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||||||||||| | ||||||||||||| | |||| ||||||||||| || |||||||| |
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| T |
15061528 |
ggaccaaaactgtcaaattttaaaataggaggatcaattctacaaaatgatgaaaata |
15061471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 6198103 - 6198147
Alignment:
| Q |
119 |
aattttaaaatacggggattaattctacaaattggtgaaaataga |
163 |
Q |
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| T |
6198103 |
aattttaaaatagggggaccaattctacaaaatggtgaaaataga |
6198147 |
T |
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