View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10227_low_10 (Length: 311)
Name: NF10227_low_10
Description: NF10227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10227_low_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 55825425 - 55825115
Alignment:
| Q |
1 |
agaacttgttttggaagaggctaaagcagcaaaagcagcagaacaaaaagccattaaagagatgaagattatctccgacgtgcaaagtagactctcgatt |
100 |
Q |
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| T |
55825425 |
agaacttgttttggaagaggctaaagcagcaaaagcagcagaacaaaaagccattaaagagatgaagattatctccgacgtgcaaagtagactctcgatt |
55825326 |
T |
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| Q |
101 |
tcaaaattcagcggaaagatcaggatgtcaaaggaagagtttgagtcactgaatggaaaagtgaaggaataccaagaattggcagaaaagaaagaggcag |
200 |
Q |
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| T |
55825325 |
tcaaaattcagcggaaagatcaggatgtcaaaggaagagtttgagtcactgaatggaaaagtgaaggaataccaagaattggcagaaaagaaagaggcag |
55825226 |
T |
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| Q |
201 |
ttatcatggctgagttgcaaggaatgtacacaaggaaaaatgaattagacataaaggtggaagctaacctgaaatctgttgaggaaacaaaggctgcaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825225 |
ttatcatggctgagttgcaaggaatgtacacaaggaaaaatgaattagacataaaggtggaagctaacctgaaatctgttgaggaaacaaaggctgcaat |
55825126 |
T |
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| Q |
301 |
ggagacggctt |
311 |
Q |
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||||||||||| |
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| T |
55825125 |
ggagacggctt |
55825115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 56149556 - 56149866
Alignment:
| Q |
1 |
agaacttgttttggaagaggctaaagcagcaaaagcagcagaacaaaaagccattaaagagatgaagattatctccgacgtgcaaagtagactctcgatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149556 |
agaacttgttttggaagaggctaaagcagcaaaagcagcagaacaaaaagccattaaagagatgaagattatctccgacgtgcaaagtagactctcgatt |
56149655 |
T |
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| Q |
101 |
tcaaaattcagcggaaagatcaggatgtcaaaggaagagtttgagtcactgaatggaaaagtgaaggaataccaagaattggcagaaaagaaagaggcag |
200 |
Q |
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| T |
56149656 |
tcaaaattcagcggaaagatcaggatgtcaaaggaagagtttgagtcactgaatggaaaagtgaaggaataccaagaattggcagaaaagaaagaggcag |
56149755 |
T |
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| Q |
201 |
ttatcatggctgagttgcaaggaatgtacacaaggaaaaatgaattagacataaaggtggaagctaacctgaaatctgttgaggaaacaaaggctgcaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149756 |
ttatcatggctgagttgcaaggaatgtacacaaggaaaaatgaattagacataaaggtggaagctaacctgaaatctgttgaggaaacaaaggctgcaat |
56149855 |
T |
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| Q |
301 |
ggagacggctt |
311 |
Q |
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||||||||||| |
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| T |
56149856 |
ggagacggctt |
56149866 |
T |
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