View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10227_low_11 (Length: 289)
Name: NF10227_low_11
Description: NF10227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10227_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 617437 - 617143
Alignment:
| Q |
1 |
atattagaattggaaccacatagttgaggtgcttatgctttggtatcaaatatatgtgcacaagagggaagatgggatgaagtagcccaaataagggcca |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
617437 |
atattagaattggaaccacatagttcaggtgcttatgctttggtatcaaatatatgtgcacaagggggaagatgggatgaagtagcccaaataagggcca |
617338 |
T |
|
| Q |
101 |
tgacaaagaatacagaattcagaagtactccaggatatatata----------------------gtgcatgtctggattgacaacgagtttggcggata |
178 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
617337 |
tgacaaagaatacagaattcagaactactccaggatatatatatatatatatatatatatatatagtgcatgtctggattgacaacgagtttggcggata |
617238 |
T |
|
| Q |
179 |
tattttaaaaggtaatagtattaatgctactacagccagagccaatcccacttccttatctctttattagtaaattcagcaaattcagttgaatc |
273 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
617237 |
tattttaaaagataatagaattaatgctactacagccagagccaatcccacttccttatctctttattagtaaattcagcaaattcagttgaatc |
617143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 15370391 - 15370220
Alignment:
| Q |
1 |
atattagaattggaaccacatagttgaggtgcttatgctttggtatcaaatatatgtgcacaagagggaagatgggatgaagtagcccaaataagggcca |
100 |
Q |
| |
|
|||||| |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15370391 |
atattaaaattggaaccacatagttcaggtccttatgctttagtatcaaatatatgtgcacaagggggaagatgggatgaagtagcccaaataagggcca |
15370292 |
T |
|
| Q |
101 |
tgacaaagaatacagaattcagaagtactccaggatatatatagtgcatgtctggattgacaacgagtttggcgga |
176 |
Q |
| |
|
||||||||||||||||||||| ||||||||| || ||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
15370291 |
tgacaaagaatacagaattcaaaagtactcctgg----atatagtgcatgtttggattgacaacaagtttggcgga |
15370220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University