View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10227_low_13 (Length: 282)
Name: NF10227_low_13
Description: NF10227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10227_low_13 |
 | |
|
| [»] scaffold0082 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 28 - 262
Target Start/End: Complemental strand, 37882609 - 37882378
Alignment:
| Q |
28 |
acgagcagaacctgtgttgtattgcaacaaccttcacagtcttcatataaaacgtttattgataatcatcnnnnnnnnatttcatagattagagaaaatt |
127 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37882609 |
acgagcagcaactgtgttgtattgcaacaaccttcacagtcttcatataaaacgtttattgataatcatcttttt---atttcatagattagagaaaatt |
37882513 |
T |
|
| Q |
128 |
ttaacaagttaaggatattaagagatagtgagttggaaacaagggaaacttggtcttttcggtgttctcttaaaaacacgcgggcgtactccttgcttct |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37882512 |
ttaacaagttaaggatattaagagatagtgagttggaaacaagggaaacttggttttttcggtgttctcttaaaaacacgcgggcgtactccttgcttct |
37882413 |
T |
|
| Q |
228 |
ggggacattgatccaaagctcgagtacggtccgtg |
262 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
37882412 |
ggggacattgatccgaagctcgagtacggtccgtg |
37882378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 14752 - 14837
Alignment:
| Q |
177 |
ttggtcttttcggtgttctcttaaaaacacgcgggcgtactccttgcttctggggacattgatccaaagctcgagtacggtccgtg |
262 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14752 |
ttggttttttcggtgttctcttaaaaacacgcgggcgtactccttgcttctggggacattgatccgaagctcgagtacggtccgtg |
14837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 17604524 - 17604590
Alignment:
| Q |
192 |
ttctcttaaaaacacgcgggcgtactccttgcttctggggacattgatccaaagctcgagtacggtc |
258 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
17604524 |
ttctcttaaaaacaatcgggcatactctttgcttatggggacattgatctgaagctcgagtacggtc |
17604590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University