View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10227_low_17 (Length: 252)
Name: NF10227_low_17
Description: NF10227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10227_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 47293211 - 47293263
Alignment:
| Q |
189 |
aattaaaaatagattggtttttaaagcatgtgaaatataggatttggacctat |
241 |
Q |
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| T |
47293211 |
aattaaaaatagattggtttttaaagcatgtgaaatataggatttggacctat |
47293263 |
T |
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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 195
Target Start/End: Original strand, 6776225 - 6776349
Alignment:
| Q |
71 |
ttgttgcacgattcctattttgtttttcagttcaattaat-aatttaaaatgagaaaatgatgtggcagattgttattggatgactgtgtaaannnnnnn |
169 |
Q |
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| T |
6776225 |
ttgttgcacgattcctattttttgtttaa-ttaaattaaccaattttaaatgagaagatgatgtggcagattgttattggatgactgtgtaaactatctt |
6776323 |
T |
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| Q |
170 |
nacacaatcagtgcactacaattaaa |
195 |
Q |
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| T |
6776324 |
tacactgtcagtgcactacaattaaa |
6776349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 6776105 - 6776027
Alignment:
| Q |
117 |
aaatgagaaaatgatgtggcagattgttattggatgactgtgtaaannnnnnnnacacaatcagtgcactacaattaaa |
195 |
Q |
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| T |
6776105 |
aaatgagaagatgatgtggcagattgttattggatgactgtgtaaactatctttacactgtcagtgcactacaattaaa |
6776027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 161
Target Start/End: Complemental strand, 818041 - 817951
Alignment:
| Q |
71 |
ttgttgcacgattcctattttgtttttcagttcaattaat-aatttaaaatgagaaaatgatgtggcagattgttattggatgactgtgtaa |
161 |
Q |
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| T |
818041 |
ttgttgcacgattcctattttttgtttaa-ttaaattaaccaattttaaatgagaagatgatgtggcagattgttattggatgactgtgtaa |
817951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 818504 - 818555
Alignment:
| Q |
111 |
aatttaaaatgagaaaatgatgtggcagattgttattggatgactgtgtaaa |
162 |
Q |
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| T |
818504 |
aattttaaatgagaagatgatgtggcaaattgttattggatgactgtgtaaa |
818555 |
T |
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