View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10227_low_19 (Length: 250)
Name: NF10227_low_19
Description: NF10227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10227_low_19 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0354 (1 HSPs) |
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| [»] scaffold0068 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 33347861 - 33347622
Alignment:
| Q |
11 |
gatggacatcataatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttactt |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33347861 |
gatgcacatcataatccaatttatccatctatcagaaaaacccatttttatcataacctttttcagataactccaatcaattatgtcatacgctttactt |
33347762 |
T |
|
| Q |
111 |
atatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggacagatc |
210 |
Q |
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|| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33347761 |
atgtcaagcttaagagcaacatctcccaatgtacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggatagatc |
33347662 |
T |
|
| Q |
211 |
gacctgcaacaaatgcagattgactatcagaaatgcactt |
250 |
Q |
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| T |
33347661 |
gacccggaacaaatgcagattgactatcagaaatgcactt |
33347622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 19111951 - 19112182
Alignment:
| Q |
19 |
tcataatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttacttatatccag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| || |
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| T |
19111951 |
tcataatccaatttatccatctatcagaaaaacccatttttatcataacccttttcaaataactccaatcaattatgtcatacgttttacttatatcaag |
19112050 |
T |
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| Q |
119 |
cttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggacagatcgacctgca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | | |
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| T |
19112051 |
cttaagagcaacatctcccaatatacctttgactttcgactccatataatgaatgatctctatggcttccatagcattatctaggatagatcgacccgga |
19112150 |
T |
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| Q |
219 |
acaaatgcagattgactatcagaaatgcactt |
250 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
19112151 |
acaaatgcagattgactatcagaaatgcactt |
19112182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 26383521 - 26383760
Alignment:
| Q |
11 |
gatggacatcataatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttactt |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26383521 |
gatgcacatcataatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattctgtcatacgctttactt |
26383620 |
T |
|
| Q |
111 |
atatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggacagatc |
210 |
Q |
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||||| |||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26383621 |
atatcaagcttaagagaaacatctcccaatgtaactttgagtttcgacttcatataatgaatgatctctatggctgccatagcattatctaggatagatc |
26383720 |
T |
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| Q |
211 |
gacctgcaacaaatgcagattgactatcagaaatgcactt |
250 |
Q |
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|||| | |||||||||| ||||||||| |||||||||||| |
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| T |
26383721 |
gacccggaacaaatgcaaattgactattagaaatgcactt |
26383760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 39530135 - 39530084
Alignment:
| Q |
16 |
acatcataatccaatttatccatctatcagaaaaacccatttttatcataac |
67 |
Q |
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||||||| ||||||| ||||||||||| ||| ||||||||||| |||||||| |
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| T |
39530135 |
acatcatgatccaatctatccatctattagagaaacccattttaatcataac |
39530084 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 48211307 - 48211202
Alignment:
| Q |
94 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc |
193 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| |||||||| |||||||||||| ||||| |||||| | |
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| T |
48211307 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatatgatgaatgatctcaatggcagccataac |
48211208 |
T |
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| Q |
194 |
attatc |
199 |
Q |
| |
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|||||| |
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| T |
48211207 |
attatc |
48211202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 198
Target Start/End: Original strand, 46390140 - 46390244
Alignment:
| Q |
94 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc |
193 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| |||||||| |||||||||||| ||||| ||||| | |
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| T |
46390140 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatatgatgaatgatctcaatggcaaccataac |
46390239 |
T |
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| Q |
194 |
attat |
198 |
Q |
| |
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||||| |
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| T |
46390240 |
attat |
46390244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0354 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0354
Description:
Target: scaffold0354; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 30 - 97
Alignment:
| Q |
183 |
gctgccatagcattatctaggacagatcgacctgcaacaaatgcagattgactatcagaaatgcactt |
250 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | ||||||||||| ||||| |||||||||||||| |
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|
| T |
30 |
gctgccatagcattatctaggatagatcgacccggaacaaatgcaggttgacagtcagaaatgcactt |
97 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 11762 - 11867
Alignment:
| Q |
94 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc |
193 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| ||||||| || ||||||||| ||||| ||||||| |
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| T |
11762 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatacgattaatgatctcaatggcaaccatagc |
11861 |
T |
|
| Q |
194 |
attatc |
199 |
Q |
| |
|
|||||| |
|
|
| T |
11862 |
attatc |
11867 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 21702148 - 21702043
Alignment:
| Q |
94 |
tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc |
193 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||| || ||||||| ||||||||||||| ||||||| || ||||||||| ||||| ||||||| |
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|
| T |
21702148 |
tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatacgattaatgatctcaatggcaaccatagc |
21702049 |
T |
|
| Q |
194 |
attatc |
199 |
Q |
| |
|
|||||| |
|
|
| T |
21702048 |
attatc |
21702043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 5613176 - 5613214
Alignment:
| Q |
83 |
ccaatcaattttgtcatacgctttacttatatccagctt |
121 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||| |
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|
| T |
5613176 |
ccaatcaattctatcatacgctttacttatatccagctt |
5613214 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 22907946 - 22907829
Alignment:
| Q |
16 |
acatcataatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttacttatatc |
115 |
Q |
| |
|
||||||||||||| || | |||| ||||||||| ||||| | | ||||||||| | ||||||||||||||||| ||||||| ||||| || ||||| |
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|
| T |
22907946 |
acatcataatccatttaacccattgatcagaaaaccccatctctgtcataacccctcgaagataactccaatcaatcctgtcataagctttgctaatatc |
22907847 |
T |
|
| Q |
116 |
cagcttaagagcaacatc |
133 |
Q |
| |
|
|| || | ||||||||| |
|
|
| T |
22907846 |
aagttttaaagcaacatc |
22907829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 199
Target Start/End: Original strand, 23266603 - 23266720
Alignment:
| Q |
82 |
tccaatcaattttgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctat |
181 |
Q |
| |
|
|||| |||||||||||||| ||||| || ||||| || || ||||| || ||||| | || | ||||||||||||||||||| ||| || || ||||| |
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|
| T |
23266603 |
tccactcaattttgtcatatgctttgctaatatcaagtttcagagccacttctccaacgttatccttgactttcgacttcatatgatgtattatttctat |
23266702 |
T |
|
| Q |
182 |
ggctgccatagcattatc |
199 |
Q |
| |
|
|| |||||| ||||||| |
|
|
| T |
23266703 |
agcagccataacattatc |
23266720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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