View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10227_low_20 (Length: 243)
Name: NF10227_low_20
Description: NF10227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10227_low_20 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 16791705 - 16791458
Alignment:
| Q |
1 |
caatgagatggacatcaaaataatcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatacgtggttccga |
100 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
16791705 |
caatgagatgaaaatcaaaataatcaatgcaaatagttgaaaatagaatataaaatcacttacctttttatcataagtgaagtgagatacatggttctga |
16791606 |
T |
|
| Q |
101 |
ttgatagtcactgcattgtacatgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgataa |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16791605 |
ttgatagtcactgcattgtacatgattttaatacgtgacccttcactttgttcgatggctactcctaatgcactttcaatattttccttttcagcgataa |
16791506 |
T |
|
| Q |
201 |
ccatctca-----gagaatcgattgtttatgttttttatttccactaa |
243 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16791505 |
ccatctcatagtcgagaatcgattgtttatgttttttatttccactaa |
16791458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 16790299 - 16790051
Alignment:
| Q |
1 |
caatgagatggacatcaaaataatcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatacgtggttccga |
100 |
Q |
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|||||||||| | ||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| ||||| || |
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| T |
16790299 |
caatgagatgaaaatcaaaatattcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaaggttctga |
16790200 |
T |
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| Q |
101 |
ttgatagtcactgcattgtacatgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgataa |
200 |
Q |
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| T |
16790199 |
tcgatagtcactgcattgtacatgattttaacaattgatccttcactatgttcggtcgctactcctagcgcactttcaacattttccttttcagcaataa |
16790100 |
T |
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| Q |
201 |
ccatctcagag------aatcgattgtttatg-ttttttatttccacta |
242 |
Q |
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|||||||| || ||||||| ||||||| |||||||||||||||| |
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| T |
16790099 |
ccatctcatagtcaaacaatcgatcgtttatgtttttttatttccacta |
16790051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 16616778 - 16616983
Alignment:
| Q |
3 |
atgagatggacatcaaaataatcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatacgtggttccgatt |
102 |
Q |
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|||||||| | |||||||| |||||||||||| || |||| || ||||||||||| |||||||||||||| |||| ||||||||||| |||| |||| |
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| T |
16616778 |
atgagatgaaaatcaaaatggtcaatgcaaataattcaaaacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgatt |
16616877 |
T |
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| Q |
103 |
gatagtcactgcattgtacatgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgataacc |
202 |
Q |
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||||| ||||||||||||||| ||||| | |||| |||||||||||||||||| |||||||| | | ||||||||| | ||||||||| |||||||||| |
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| T |
16616878 |
gatagacactgcattgtacataattttcacaagtaatccttcactttgttcggcagctactccaactacactttcaacaatttcctttttagcgataacc |
16616977 |
T |
|
| Q |
203 |
atctca |
208 |
Q |
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| |||| |
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| T |
16616978 |
acctca |
16616983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 16792415 - 16792621
Alignment:
| Q |
1 |
caatgagatggacatcaaaataatcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatacgtggttccga |
100 |
Q |
| |
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|||||| ||| | |||||||||||||||| |||| ||||||| | ||||||||||| |||| ||||||||| || ||||||||||||| ||| | || |
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| T |
16792415 |
caatgaaatgaaaatcaaaataatcaatgtgaataattgaaaacataatataaaatcatttacatttttatcagaaatgaagtgagatacatggctttga |
16792514 |
T |
|
| Q |
101 |
ttgatagtcactgcattgtacatgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgataa |
200 |
Q |
| |
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|||||||||| |||| ||||||||||||||| |||| ||| |||| |||||||| |||||||||| |||||||| ||||||||||||||| |||||| |
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| T |
16792515 |
ttgatagtcattgcaatgtacatgattttaacaagtaatcattcaatttgttcgaaagctactcctagcgcactttc-atattttccttttcaacgataa |
16792613 |
T |
|
| Q |
201 |
ccatctca |
208 |
Q |
| |
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||| |||| |
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| T |
16792614 |
ccacctca |
16792621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 16628476 - 16628683
Alignment:
| Q |
1 |
caatgagatggacatcaaaataatcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatacgtggttccga |
100 |
Q |
| |
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||||||||| | |||||||| ||||| ||||||| || ||| || |||||||| || ||||||||||||| |||||||||||||||| |||| || |
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| T |
16628476 |
caatgagataaaaatcaaaatgatcaacgcaaataattccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttga |
16628575 |
T |
|
| Q |
101 |
ttgatagtcactgcattgtacatgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgataa |
200 |
Q |
| |
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||||| ||||||||||||||||||||||||| |||| ||||| || |||||||| |||| ||||| | ||||||| ||||||||||||| |||||| |
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| T |
16628576 |
ttgatggtcactgcattgtacatgattttaacaagtaatcctccaacttgttcggaagctaatcctactaacctttcaacattttccttttcaccgataa |
16628675 |
T |
|
| Q |
201 |
ccatctca |
208 |
Q |
| |
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||| |||| |
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| T |
16628676 |
ccacctca |
16628683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 16637357 - 16637564
Alignment:
| Q |
1 |
caatgagatggacatcaaaataatcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatacgtggttccga |
100 |
Q |
| |
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||||||||| | |||||||| ||||| ||||||| || ||| || |||||||| || ||||||||||||| |||||||||||||||| |||| || |
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| T |
16637357 |
caatgagataaaaatcaaaatgatcaacgcaaataattccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttga |
16637456 |
T |
|
| Q |
101 |
ttgatagtcactgcattgtacatgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgataa |
200 |
Q |
| |
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||||| ||||||||||||||||||||||||| |||| ||||| || |||||||| |||| ||||| | ||||||| ||||||||||||| |||||| |
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| T |
16637457 |
ttgatggtcactgcattgtacatgattttaacaagtaatcctccaacttgttcggaagctaatcctactaacctttcaacattttccttttcaccgataa |
16637556 |
T |
|
| Q |
201 |
ccatctca |
208 |
Q |
| |
|
||| |||| |
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| T |
16637557 |
ccacctca |
16637564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 16790515 - 16790709
Alignment:
| Q |
14 |
atcaaaataatcaatgcaaatagttgaaaatagtatataaaatcacttaccttttt-atcataagtgaagtgagatacgtggttccgattgatagtcact |
112 |
Q |
| |
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|||||||||||||||| ||||||| |||| | ||||||||||| |||| ||||| |||| ||||||| |||||||| ||| | |||||||||||| | |
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| T |
16790515 |
atcaaaataatcaatgtgaatagttcaaaagataatataaaatcatttacattttttatcagaagtgaaatgagatacatggctttgattgatagtcatt |
16790614 |
T |
|
| Q |
113 |
gcattgtacatgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgataaccatctca |
208 |
Q |
| |
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||||||||||||||||||| |||| ||| |||| |||||||| |||||||||| |||||||| ||||||||| ||||| ||||||||| |||| |
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| T |
16790615 |
gcattgtacatgattttaacaagtaatcattcaatttgttcgaaagctactcctagcgcactttc-atattttccctttcaacgataaccacctca |
16790709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 38877319 - 38877446
Alignment:
| Q |
14 |
atcaaaataatcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatacgtggttccgattgatagtcactg |
113 |
Q |
| |
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||||||||||| |||| ||||||| |||| || |||||||| || | |||||||||||||| || ||||||||||| ||| | |||| |||||||||| |
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| T |
38877319 |
atcaaaataattaatgtgaatagttcaaaacagaatataaaaccattcacctttttatcatatgtcaagtgagatacaaggtcctgattcatagtcactg |
38877418 |
T |
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| Q |
114 |
cattgtacatgattttaataagtgatcc |
141 |
Q |
| |
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|||||||||||||||||| |||| |||| |
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| T |
38877419 |
cattgtacatgattttaagaagtaatcc |
38877446 |
T |
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Back To:
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