View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10227_low_21 (Length: 242)
Name: NF10227_low_21
Description: NF10227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10227_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 2615244 - 2615015
Alignment:
| Q |
1 |
ttcagttctagtgattattgtgaaattgagaatcattaactgattctcacagcaacatcatatgacgacaatgtcaaaaactccaatcgctacaaattaa |
100 |
Q |
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| T |
2615244 |
ttcagttctagtgattattgtgaaattgataatcattaactgattctcacagcaacatcatatgacgacaatgtcaaaaactccaatcgctacaaattaa |
2615145 |
T |
|
| Q |
101 |
atagtactatgttactaatttattattctaagcaacatatagaatatcatttcagctaagttgtcacaaacgtnnnnnnntgtgattcatataaatgcca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
2615144 |
atagtactatgttactaatttattattctaagcaacatatagaatatcatttcagctaatttgtcacaaacgtaaaaaaatgtgattcatataaatgcca |
2615045 |
T |
|
| Q |
201 |
aaaactagtagcttccagcaaattaatgat |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2615044 |
aaaactagtagcttccagcaaattaatgat |
2615015 |
T |
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