View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10227_low_22 (Length: 241)
Name: NF10227_low_22
Description: NF10227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10227_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 42854961 - 42854736
Alignment:
| Q |
1 |
gaataccat-atatatcttatgcatatattatattgtatctgagtcaaaaaacaaaagcaggtcgaacatccattgacagagagtaatctaattgactta |
99 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42854961 |
gaataccatgatatatcttatgcacatattatattgtatctgagtcaaaaaacaaaggcaggtcgaacatccattgacagagagtaatctaattgactta |
42854862 |
T |
|
| Q |
100 |
aggacatatatactgcagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaatatctatatagcggaagacagagaaacg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42854861 |
aggacatatatactgcagtgatcctaatcaataactttgatagaatggcctcacaagttctaagttaagcaatatctatatagcggaagatgcagaaacg |
42854762 |
T |
|
| Q |
200 |
gacctcaatgttgtcaagcaagtcac |
225 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
42854761 |
gacctcaatgttgtcaagcaagtcac |
42854736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 42848390 - 42848208
Alignment:
| Q |
22 |
catatattatattgtatctgagtcaaaaaacaaaa-------gcaggtcgaacatccattgacagagagtaatctaattgacttaaggacatatatactg |
114 |
Q |
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|||||||||||||||||| ||||||||||| |||| |||||| ||||| || | |||||||||||||||||||||||||||||||||||||||| |
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| T |
42848390 |
catatattatattgtatcagagtcaaaaaaaaaaaaaacaaagcaggtggaacacccgtagacagagagtaatctaattgacttaaggacatatatactg |
42848291 |
T |
|
| Q |
115 |
cagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaatatctatatagcggaagacagagaaa |
197 |
Q |
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| T |
42848290 |
cagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaataactatatagcggaagacaaagaaa |
42848208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 42856594 - 42856379
Alignment:
| Q |
12 |
atatcttatgcatatattatattgtatctgagtcaaaaaacaaaagcaggtcgaacatccattgacagagagtaatctaattgacttaagg----acata |
107 |
Q |
| |
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|||||||| ||| ||||||||||||||| | |||| |||| |||| |||| ||||| || | || |||||||| ||||||||| || | | ||| |
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| T |
42856594 |
atatcttacgcacttattatattgtatctcaatcaagaaaccaaaggaggtggaacaataataggcaaagagtaatgtaattgactcaatgatatatata |
42856495 |
T |
|
| Q |
108 |
tatactgcagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaatatctatatagcggaagacagagaaacggacctcaa |
207 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||| ||||||| ||||| | ||||| |
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| T |
42856494 |
tatactgcagtgatcctaatcaataactttgacagaatggccttgcaagttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtctcaa |
42856395 |
T |
|
| Q |
208 |
tgttgtcaagcaagtc |
223 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
42856394 |
tgttgtcaagcaagtc |
42856379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 105 - 223
Target Start/End: Complemental strand, 42860564 - 42860446
Alignment:
| Q |
105 |
atatatactgcagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaatatctatatagcggaagacagagaaacggacct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||| ||||||| ||||| | || |
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| T |
42860564 |
atatatactgcagtgatcctaatcaataactttgacagaatggccttgcaagttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtct |
42860465 |
T |
|
| Q |
205 |
caatgttgtcaagcaagtc |
223 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
42860464 |
caatgttgtcaagcaagtc |
42860446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 42853062 - 42852843
Alignment:
| Q |
10 |
atatatcttatgcatatattatattgtatctgagtcaaaaaaca--aaagcaggtcgaacatccattgacagagagtaatctaattgacttaag----ga |
103 |
Q |
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|||||||||||||| ||||||||| |||||| || |||||| | |||||| || ||||| ||| |||||||| ||||||||| ||||||| || |
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| T |
42853062 |
atatatcttatgcacatattatatcgtatcttcgtaaaaaaaaaccaaagcatgtggaacacacatagacagagattaatctaatcgacttaattcatga |
42852963 |
T |
|
| Q |
104 |
catatatactgcagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaatatctatatagcggaagacagagaaacggacc |
203 |
Q |
| |
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||||| ||||| ||| |||| |||||||||||||||||||||||| | |||||| ||| ||||||||| ||||| ||| | ||| | ||||| | | |
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| T |
42852962 |
catatgtactgtagtaatccaaatcaataactttgatagaatggcttgccaagttcaaagataagcaataactatacagcagcagaaaaagaaatgtgtc |
42852863 |
T |
|
| Q |
204 |
tcaatgttgtcaagcaagtc |
223 |
Q |
| |
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||||||| |||||||||||| |
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|
| T |
42852862 |
tcaatgtcgtcaagcaagtc |
42852843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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