View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10227_low_24 (Length: 206)
Name: NF10227_low_24
Description: NF10227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10227_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 7844205 - 7844375
Alignment:
| Q |
14 |
agagaagaaaagtgtagttattatatattgatgaaaagagagaagattactgggaaatttctgcggcaaactgtttggcaacatcatcaatggcattggt |
113 |
Q |
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| T |
7844205 |
agagaagaaaagtgtagttattatatattgatgaaaagagagaagattactgggaaatttctgcggcaaactgtttggcaacatcatcaatggcattggt |
7844304 |
T |
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| Q |
114 |
ctcttcttcagctttatgcctcatgttttgagtggcatcatcattttccaaccccaaacttctgcaataat |
184 |
Q |
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| T |
7844305 |
ctcttcttcagctttatgcctcatgttttgagtggcatcattattttccaaccccaaacttctgcaataat |
7844375 |
T |
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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 7843333 - 7843395
Alignment:
| Q |
118 |
tcttcagctttatgcctcatgttttgagtggcatcatcattttccaaccccaaacttctgcaa |
180 |
Q |
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| T |
7843333 |
tcttcagctttatacttcatgttttgggtgcaatcatcattttctaaccccaaacttctgcaa |
7843395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 7845522 - 7845588
Alignment:
| Q |
59 |
attactgggaaatttctgcggcaaactgtttggcaacatcatcaatggcattggtctcttcttcagc |
125 |
Q |
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| T |
7845522 |
attactggaagatttctgcagcaaactgtttgacatcctcatctttggcattggtctcttcttcagc |
7845588 |
T |
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