View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10227_low_3 (Length: 458)

Name: NF10227_low_3
Description: NF10227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10227_low_3
NF10227_low_3
[»] chr8 (5 HSPs)
chr8 (72-416)||(42467656-42468012)
chr8 (15-63)||(42467524-42467572)
chr8 (72-166)||(42472992-42473086)
chr8 (72-166)||(42480250-42480344)
chr8 (72-129)||(33362099-33362156)
[»] chr7 (2 HSPs)
chr7 (72-129)||(41595221-41595278)
chr7 (72-129)||(31420459-31420516)
[»] chr5 (2 HSPs)
chr5 (72-129)||(14008072-14008129)
chr5 (72-129)||(23122561-23122618)
[»] chr2 (1 HSPs)
chr2 (72-129)||(43523828-43523885)
[»] scaffold0005 (1 HSPs)
scaffold0005 (72-129)||(40961-41018)
[»] chr4 (1 HSPs)
chr4 (72-129)||(14798710-14798767)
[»] chr3 (3 HSPs)
chr3 (72-129)||(2735090-2735147)
chr3 (72-129)||(22511154-22511211)
chr3 (72-129)||(40924136-40924193)
[»] chr1 (1 HSPs)
chr1 (72-129)||(27129739-27129796)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 72 - 416
Target Start/End: Original strand, 42467656 - 42468012
Alignment:
Q  72 caaaatttggaatcaccaatttcgtcacggatatgctttttcactctactagcaagaacatgcaagatgtgtttttgaaatggaaatgaagcacagttgg 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42467656 caaaatttggaatcaccaatttcgtcacggatatgctttttcactctactagcaagaacatgcaagatgtgtttttgaaatggaaatgaagcacagttgg 42467755  T
Q  172 aaagataggagtcatttcccgacaaggcctgggaaaattcatcattccaagatgctataaggtcgaccattgaaagaaaagc-----ctcttggtgtc-- 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     |||||||||||      
T  42467756 aaagataggagtcatttcccgacaaggcctgggaaaattcatcattccaagatgctataagttcgaccattgaaagaaaagcctcttctcttggtgtctt 42467855  T
Q  265 ----------tttgttcgccaaaaagatcaatactaaaagccatatcttgaattgaagtgctaaaaaacgaacaatggtgatgaaattcttaagaaatat 354  Q
              ||||||||||||||||| |||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42467856 tgttcagaagtttgttcgccaaaaagaacaatactaaaagccatatc-----ttgaagtgctaaaaaacgaacaatggtgatgaaattcttaagaaatat 42467950  T
Q  355 tcgattcttggtaatttgatctgagttttgagcgtgaataacattctcagactcatcatcag 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42467951 tcgattcttggtaatttgatctgagttttgagcgtgaataacattctcagactcatcatcag 42468012  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 42467524 - 42467572
Alignment:
Q  15 cacaaacttgttcattaaaatgattgtatccaacttccacaatattgtg 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42467524 cacaaacttgttcattaaaatgattgtatccaacttccacaatattgtg 42467572  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 42472992 - 42473086
Alignment:
Q  72 caaaatttggaatcaccaatttcgtcacggatatgctttttcactctactagcaagaacatgcaagatgtgtttttgaaatggaaatgaagcaca 166  Q
    ||||||||||||||||||||||| || || |||||  |||||||| || ||| ||||| ||||||||| | |||| ||||| |||||||||||||    
T  42472992 caaaatttggaatcaccaatttcctcgcgaatatgacttttcactttattagaaagaatatgcaagatctcttttcgaaattgaaatgaagcaca 42473086  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 42480250 - 42480344
Alignment:
Q  72 caaaatttggaatcaccaatttcgtcacggatatgctttttcactctactagcaagaacatgcaagatgtgtttttgaaatggaaatgaagcaca 166  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||  ||||| || |||  ||||||| | |||| ||||| ||| |||||||||    
T  42480250 caaaatttggaatcaccaatttcctcacggatatggtttttcacttgactagaaacaactcgcaagatctcttttcgaaattgaagtgaagcaca 42480344  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 33362156 - 33362099
Alignment:
Q  72 caaaatttggaatcaccaatttcgtcacggatatgctttttcactctactagcaagaa 129  Q
    |||||||| |||||||||||||| ||||| ||||| ||| |||| ||||||| |||||    
T  33362156 caaaatttagaatcaccaatttcttcacgaatatgttttctcaccctactagaaagaa 33362099  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 41595278 - 41595221
Alignment:
Q  72 caaaatttggaatcaccaatttcgtcacggatatgctttttcactctactagcaagaa 129  Q
    ||||| ||||||||||||||||| ||||||||||| |||||||||||||||| |||||    
T  41595278 caaaacttggaatcaccaatttcctcacggatatgttttttcactctactagaaagaa 41595221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 31420516 - 31420459
Alignment:
Q  72 caaaatttggaatcaccaatttcgtcacggatatgctttttcactctactagcaagaa 129  Q
    |||||||| |||||||||||||| ||||| ||||| ||| |||| ||||||| |||||    
T  31420516 caaaatttagaatcaccaatttcttcacgaatatgttttctcaccctactagaaagaa 31420459  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 14008129 - 14008072
Alignment:
Q  72 caaaatttggaatcaccaatttcgtcacggatatgctttttcactctactagcaagaa 129  Q
    ||||| ||||||||||||||||| ||||||||||| |||||||||||||||| |||||    
T  14008129 caaaacttggaatcaccaatttcctcacggatatgttttttcactctactagaaagaa 14008072  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 23122561 - 23122618
Alignment:
Q  72 caaaatttggaatcaccaatttcgtcacggatatgctttttcactctactagcaagaa 129  Q
    ||||| ||||||||||||||||| ||||| ||||| |||||||||||||||| |||||    
T  23122561 caaaacttggaatcaccaatttcctcacgaatatgttttttcactctactagaaagaa 23122618  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 43523885 - 43523828
Alignment:
Q  72 caaaatttggaatcaccaatttcgtcacggatatgctttttcactctactagcaagaa 129  Q
    ||||| ||||||||||||||||| ||||||||||| |||||||||||||||| |||||    
T  43523885 caaaacttggaatcaccaatttcctcacggatatgttttttcactctactagaaagaa 43523828  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 41018 - 40961
Alignment:
Q  72 caaaatttggaatcaccaatttcgtcacggatatgctttttcactctactagcaagaa 129  Q
    |||||||| |||||||||||||| ||||| ||||| ||| |||| ||||||| |||||    
T  41018 caaaatttagaatcaccaatttcttcacgaatatgttttctcaccctactagaaagaa 40961  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 14798710 - 14798767
Alignment:
Q  72 caaaatttggaatcaccaatttcgtcacggatatgctttttcactctactagcaagaa 129  Q
    |||||||| |||||||||||||| ||||| ||||| ||| |||| ||||||| |||||    
T  14798710 caaaatttagaatcaccaatttcttcacgaatatgttttctcaccctactagaaagaa 14798767  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 2735147 - 2735090
Alignment:
Q  72 caaaatttggaatcaccaatttcgtcacggatatgctttttcactctactagcaagaa 129  Q
    |||||||| |||||||||||||| ||||| ||||| ||| |||| ||||||| |||||    
T  2735147 caaaatttagaatcaccaatttcttcacgaatatgttttctcaccctactagaaagaa 2735090  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 22511154 - 22511211
Alignment:
Q  72 caaaatttggaatcaccaatttcgtcacggatatgctttttcactctactagcaagaa 129  Q
    ||||| || |||||||||||||| ||||  ||||| |||||||||||||||| |||||    
T  22511154 caaaacttcgaatcaccaatttcctcacaaatatgttttttcactctactagaaagaa 22511211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 40924193 - 40924136
Alignment:
Q  72 caaaatttggaatcaccaatttcgtcacggatatgctttttcactctactagcaagaa 129  Q
    |||||||| |||||||||||||| ||||| ||||| ||| |||| ||||||| |||||    
T  40924193 caaaatttagaatcaccaatttcttcacgaatatgttttctcaccctactagaaagaa 40924136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 27129796 - 27129739
Alignment:
Q  72 caaaatttggaatcaccaatttcgtcacggatatgctttttcactctactagcaagaa 129  Q
    |||||||| |||||||||||||| ||||| ||||| ||| |||| ||||||| |||||    
T  27129796 caaaatttagaatcaccaatttcttcacgaatatgttttctcaccctactagaaagaa 27129739  T

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