View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10227_low_4 (Length: 364)

Name: NF10227_low_4
Description: NF10227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10227_low_4
NF10227_low_4
[»] chr4 (12 HSPs)
chr4 (1-67)||(51066449-51066515)
chr4 (5-67)||(39863892-39863954)
chr4 (2-67)||(8740404-8740469)
chr4 (2-67)||(46494509-46494574)
chr4 (13-67)||(7173707-7173761)
chr4 (3-56)||(2294822-2294875)
chr4 (2-67)||(50905704-50905769)
chr4 (2-69)||(36192496-36192562)
chr4 (4-61)||(32139126-32139183)
chr4 (2-43)||(51714076-51714117)
chr4 (2-44)||(30970495-30970537)
chr4 (28-67)||(51066205-51066244)
[»] chr3 (13 HSPs)
chr3 (2-68)||(8400810-8400876)
chr3 (2-67)||(7417754-7417819)
chr3 (2-67)||(35198721-35198786)
chr3 (2-68)||(48078052-48078118)
chr3 (2-67)||(22855843-22855908)
chr3 (3-67)||(34824512-34824576)
chr3 (2-56)||(55467966-55468020)
chr3 (2-55)||(52545289-52545342)
chr3 (6-68)||(39438934-39438996)
chr3 (3-40)||(50823681-50823718)
chr3 (3-40)||(50852142-50852179)
chr3 (2-38)||(50726108-50726144)
chr3 (2-38)||(50786704-50786740)
[»] chr7 (12 HSPs)
chr7 (2-67)||(35109647-35109712)
chr7 (2-67)||(16059464-16059529)
chr7 (2-67)||(18117055-18117120)
chr7 (2-67)||(21577209-21577274)
chr7 (2-67)||(38265348-38265413)
chr7 (2-56)||(41151139-41151193)
chr7 (10-67)||(34721790-34721847)
chr7 (2-64)||(45278411-45278473)
chr7 (13-67)||(40038621-40038675)
chr7 (2-67)||(11216725-11216790)
chr7 (2-67)||(38405265-38405330)
chr7 (2-64)||(48176359-48176420)
[»] chr8 (12 HSPs)
chr8 (2-70)||(19723264-19723332)
chr8 (2-67)||(4840096-4840161)
chr8 (2-67)||(11403957-11404022)
chr8 (2-67)||(27881099-27881164)
chr8 (2-67)||(28021280-28021345)
chr8 (7-68)||(22711464-22711525)
chr8 (6-68)||(32296754-32296816)
chr8 (2-67)||(11610236-11610301)
chr8 (6-66)||(28739676-28739736)
chr8 (2-66)||(6097521-6097585)
chr8 (2-42)||(29767169-29767209)
chr8 (15-67)||(24475120-24475172)
[»] chr5 (5 HSPs)
chr5 (2-69)||(20983114-20983181)
chr5 (2-68)||(17064278-17064344)
chr5 (93-134)||(31638152-31638193)
chr5 (2-39)||(37976530-37976567)
chr5 (15-57)||(41910792-41910834)
[»] scaffold0021 (1 HSPs)
scaffold0021 (2-67)||(107802-107867)
[»] chr2 (18 HSPs)
chr2 (1-70)||(5039373-5039442)
chr2 (3-67)||(2357187-2357251)
chr2 (6-68)||(6672908-6672970)
chr2 (1-67)||(44650349-44650415)
chr2 (2-67)||(17136343-17136408)
chr2 (2-67)||(40155996-40156061)
chr2 (2-67)||(7860257-7860322)
chr2 (2-67)||(10745343-10745408)
chr2 (3-67)||(2754163-2754227)
chr2 (2-70)||(25987773-25987841)
chr2 (3-69)||(26690108-26690174)
chr2 (1-67)||(30372790-30372856)
chr2 (4-68)||(2098953-2099017)
chr2 (3-41)||(36836441-36836479)
chr2 (2-43)||(13047262-13047303)
chr2 (7-67)||(36380248-36380308)
chr2 (2-51)||(21637869-21637918)
chr2 (2-30)||(45137081-45137109)
[»] chr1 (10 HSPs)
chr1 (3-68)||(20014413-20014478)
chr1 (2-67)||(15034411-15034476)
chr1 (2-67)||(30054553-30054618)
chr1 (2-68)||(12025136-12025202)
chr1 (6-67)||(45323962-45324023)
chr1 (2-43)||(4573359-4573400)
chr1 (2-67)||(30370171-30370236)
chr1 (2-64)||(21090074-21090136)
chr1 (2-68)||(33763365-33763431)
chr1 (13-55)||(35617948-35617990)
[»] chr6 (4 HSPs)
chr6 (2-67)||(35163861-35163926)
chr6 (2-64)||(14496311-14496373)
chr6 (2-67)||(2711845-2711910)
chr6 (2-55)||(19686938-19686991)


Alignment Details
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 51066515 - 51066449
Alignment:
Q  1 agctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51066515 agctcgaacccgagttctctcggattcaagacctgtctttttaccactagaccaagtctttggagtt 51066449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 39863892 - 39863954
Alignment:
Q  5 cgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  39863892 cgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 39863954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 8740469 - 8740404
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  8740469 gctcgaacccgggatctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 8740404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 46494509 - 46494574
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||  ||||||||||    
T  46494509 gctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaaacctttggagtt 46494574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 7173707 - 7173761
Alignment:
Q  13 ggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    ||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  7173707 ggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagtt 7173761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 2294822 - 2294875
Alignment:
Q  3 ctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaag 56  Q
    |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  2294822 ctcgaacccgagttctctcgaattcaagacctgtctttttaccactagaccaag 2294875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 50905769 - 50905704
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||||| ||  ||||||||||    
T  50905769 gctcgaacccagattctctcggattcaagacctgtctttttaccactagactaaacctttggagtt 50905704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 36192562 - 36192496
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtttt 69  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||  ||||||||||||    
T  36192562 gctcgaacccgggttctctcgaattcaagacctgtctttttaccac-agactaaacctttggagtttt 36192496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 32139183 - 32139126
Alignment:
Q  4 tcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtcttt 61  Q
    |||||||| |||||||||||||||| |||||||| ||||| |||||||||||| ||||    
T  32139183 tcgaacccaggttctctcggattcatgacctgtccttttaccactagaccaagccttt 32139126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 51714076 - 51714117
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtcttttta 43  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  51714076 gctcgaacccgggttctctcggattcaagacctgtcatttta 51714117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 30970495 - 30970537
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttat 44  Q
    |||||||||||| ||||||||||||||||||||||| ||||||    
T  30970495 gctcgaacccggattctctcggattcaagacctgtcattttat 30970537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 51066244 - 51066205
Alignment:
Q  28 aagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  51066244 aagacttgtctttttaccactagaccaagtctttggagtt 51066205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 8400876 - 8400810
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 68  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  8400876 gctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagttt 8400810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 7417819 - 7417754
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  7417819 gctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 7417754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 35198786 - 35198721
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  35198786 gctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaagtt 35198721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 48078052 - 48078118
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 68  Q
    ||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||| ||||| |||||    
T  48078052 gctcgaacccgagttctctcgaattcaagacctgtcattttaccactagaccaagcctttgaagttt 48078118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 22855908 - 22855843
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    ||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||  ||||||||||    
T  22855908 gctcgaacctgggttctctcgaatttaagacctgtctttttaccactagaccaaacctttggagtt 22855843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 34824576 - 34824512
Alignment:
Q  3 ctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    ||||||| | ||||||||||||||||||| || |||||||| ||||||||||| |||||||||||    
T  34824576 ctcgaactcaggttctctcggattcaagatctatctttttaccactagaccaaatctttggagtt 34824512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 55468020 - 55467966
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaag 56  Q
    |||||||||||| |||||||| ||||||||| |||| ||||| ||||||||||||    
T  55468020 gctcgaacccggattctctcgaattcaagacatgtcattttaccactagaccaag 55467966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 52545342 - 52545289
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaa 55  Q
    |||||||||||  || |||||||||||||||||||| ||||||||| |||||||    
T  52545342 gctcgaacccgaattttctcggattcaagacctgtcattttatcaccagaccaa 52545289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 39438934 - 39438996
Alignment:
Q  6 gaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 68  Q
    ||||| || ||||||||||||||||| ||||||||||| ||||| | |||| ||||| |||||    
T  39438934 gaacctggattctctcggattcaagatctgtctttttaacactatagcaagcctttgaagttt 39438996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 50823718 - 50823681
Alignment:
Q  3 ctcgaacccgggttctctcggattcaagacctgtcttt 40  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  50823718 ctcgaacccggattctctcggattcaagacttgtcttt 50823681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 50852142 - 50852179
Alignment:
Q  3 ctcgaacccgggttctctcggattcaagacctgtcttt 40  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  50852142 ctcgaacccggattctctcggattcaagacttgtcttt 50852179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 50726108 - 50726144
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtct 38  Q
    |||||||||||  ||||||||||||||||||||||||    
T  50726108 gctcgaacccgaattctctcggattcaagacctgtct 50726144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 50786740 - 50786704
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtct 38  Q
    |||||||||||  ||||||||||||||||||||||||    
T  50786740 gctcgaacccgaattctctcggattcaagacctgtct 50786704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 35109712 - 35109647
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  35109712 gctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 35109647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 16059464 - 16059529
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||    
T  16059464 gctcgaacccgggttctctcggattcaagacctgtctttttaccactagtccaagcctttggagtt 16059529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 18117055 - 18117120
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||    
T  18117055 gctcgaacccgggttctctcggattcaagacctgtctttttaccactagaacaagcctttggagtt 18117120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 21577209 - 21577274
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  21577209 gctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaagtt 21577274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 38265348 - 38265413
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  38265348 gctcgaacccaggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 38265413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 41151193 - 41151139
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaag 56  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41151193 gctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaag 41151139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 34721847 - 34721790
Alignment:
Q  10 ccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  34721847 ccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 34721790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 45278473 - 45278411
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttgga 64  Q
    ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| |||||||    
T  45278473 gctcgaacccgggttatctcggattcaagacctatctttttaccactagaccaagactttgga 45278411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 40038675 - 40038621
Alignment:
Q  13 ggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    ||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  40038675 ggttctctcagattcaagacctgtctttttaccactagatcaagtctttggagtt 40038621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 11216790 - 11216725
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||||||||||||| |||||||||||||||  |||| |||||||||||  ||||||||||    
T  11216790 gctcgaacccgggttctctcagattcaagacctgtcactttaccactagaccaaacctttggagtt 11216725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 38405265 - 38405330
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||| ||  ||||||||||||||||||||||||||||| |||||||| ||| ||||| ||||    
T  38405265 gctcgaactcgaattctctcggattcaagacctgtctttttaccactagacgaagcctttgaagtt 38405330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 48176420 - 48176359
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttgga 64  Q
    |||||||||||| |||||||||||| |||| ||||||||||| || ||||||||| |||||||    
T  48176420 gctcgaacccggattctctcggatttaagatctgtctttttacca-tagaccaagcctttgga 48176359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 19723332 - 19723264
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttttt 70  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  19723332 gctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaaacctttggagttttt 19723264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 4840161 - 4840096
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||    
T  4840161 gctcgaacccgggttctctcggattcaaaacctatctttttaccactagaccaagcctttggagtt 4840096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 11404022 - 11403957
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||| |||||||||| |||||||||||||| ||||| |||||||||||||||||||||||    
T  11404022 gctcgaacccaggttctctcgaattcaagacctgtcattttaccactagaccaagtctttggagtt 11403957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 27881099 - 27881164
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||||||||||||| ||||||||||||||| ||||| |||||||||||| ||||||||||    
T  27881099 gctcgaacccgggttctctcagattcaagacctgtcattttaccactagaccaagcctttggagtt 27881164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 28021280 - 28021345
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||||||||||||| ||||||||||||||| ||||| |||||||||||| ||||||||||    
T  28021280 gctcgaacccgggttctctcagattcaagacctgtcattttaccactagaccaagcctttggagtt 28021345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 22711525 - 22711464
Alignment:
Q  7 aacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 68  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  22711525 aacccgagttctctcggattcaagacctgtctttttaccactagaccaaacctttggagttt 22711464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 32296754 - 32296816
Alignment:
Q  6 gaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 68  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||||||  |||||||||||    
T  32296754 gaacccgggttctctcaaattcaagacctgtctttttaccactagaccaaacctttggagttt 32296816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 11610301 - 11610236
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    ||||||| ||| | |||||||||||||||||||||||||||| |||||||||||  ||||||||||    
T  11610301 gctcgaatccgagatctctcggattcaagacctgtctttttaccactagaccaaacctttggagtt 11610236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 28739676 - 28739736
Alignment:
Q  6 gaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagt 66  Q
    |||||| |||||||| | |||||||||||||| ||||| |||||||||||| |||||||||    
T  28739676 gaacccaggttctctagaattcaagacctgtcattttaccactagaccaagcctttggagt 28739736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 6097585 - 6097521
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagt 66  Q
    |||||||| ||| |||||||| |||||||||||||||||||| ||  ||||||||  ||||||||    
T  6097585 gctcgaactcggattctctcgaattcaagacctgtctttttaccataagaccaagcttttggagt 6097521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 29767209 - 29767169
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtcttttt 42  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  29767209 gctcgaccccgggttctctcagattcaagacctgtcttttt 29767169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 24475120 - 24475172
Alignment:
Q  15 ttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||| |||||||||||||||||| | |||  ||||||||||| ||||||||||    
T  24475120 ttctatcggattcaagacctgtcatcttactactagaccaagcctttggagtt 24475172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 20983114 - 20983181
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtttt 69  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20983114 gctcgaacccggattctcttggattcaagacctgtctttttatcactagaccaagcctttggagtttt 20983181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 17064344 - 17064278
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 68  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||    
T  17064344 gctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagttt 17064278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 31638193 - 31638152
Alignment:
Q  93 tagtaggtaagctcatataaacataaaataagtcaattccct 134  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  31638193 tagtaggtaagctcacataaacataaaataagtcaattccct 31638152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 37976567 - 37976530
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctt 39  Q
    |||||||||| |||||||||||||||||||||||||||    
T  37976567 gctcgaacccaggttctctcggattcaagacctgtctt 37976530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 41910834 - 41910792
Alignment:
Q  15 ttctctcggattcaagacctgtctttttatcactagaccaagt 57  Q
    ||||||| ||||||||||||||||||||| ||||||| |||||    
T  41910834 ttctctcagattcaagacctgtctttttaccactagagcaagt 41910792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 107802 - 107867
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  107802 gctcgaactcgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 107867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 5039442 - 5039373
Alignment:
Q  1 agctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttttt 70  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||    
T  5039442 agctcgaacccgagttctctcggattcaagacctgtctttttaccactataccaagcctttggagttttt 5039373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 2357187 - 2357251
Alignment:
Q  3 ctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  2357187 ctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagtt 2357251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 6672908 - 6672970
Alignment:
Q  6 gaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 68  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  6672908 gaacccgggttctctcggattcaagacctgtctttttaccactagaccaaacctttggagttt 6672970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 44650415 - 44650349
Alignment:
Q  1 agctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    ||||||||  ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  44650415 agctcgaaatcgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 44650349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 17136408 - 17136343
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||    
T  17136408 gctcgaacccgggttctctcagattcaaaacctgtcattttatcactagaccaagcctttggagtt 17136343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 40156061 - 40155996
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||  ||||||||||    
T  40156061 gctcgaacccggattctctcggattcaagacctgtctttttaccactagaccaaacctttggagtt 40155996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 7860257 - 7860322
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||| ||||| ||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  7860257 gctcaaacccaggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagtt 7860322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 10745343 - 10745408
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    ||||| ||||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||||    
T  10745343 gctcggacccgggttctctcgaattcaagacctgtctttttaccactaaaccaagcctttggagtt 10745408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 2754163 - 2754227
Alignment:
Q  3 ctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||| |||||||||||||||||||||||||||| ||||| ||||| |||||| ||||| ||||    
T  2754163 ctcgaatccgggttctctcggattcaagacctgtcattttaccactaaaccaagcctttgaagtt 2754227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 25987773 - 25987841
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttttt 70  Q
    ||||||||||| |||||||||||||||||||||||||||||| || |  | |||| |||||||||||||    
T  25987773 gctcgaacccgagttctctcggattcaagacctgtctttttaccattgtatcaagcctttggagttttt 25987841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 26690174 - 26690108
Alignment:
Q  3 ctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtttt 69  Q
    ||||||||| | |||||||| ||| || ||||||||||||| |||||||||||| ||||||||||||    
T  26690174 ctcgaacccagattctctcgaatttaaaacctgtctttttaccactagaccaagcctttggagtttt 26690108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 30372790 - 30372856
Alignment:
Q  1 agctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    ||||||||||| || ||||||| ||||||||||| |||||||| |||||||||||  ||||||||||    
T  30372790 agctcgaacccaggatctctcgaattcaagacctatctttttaccactagaccaaacctttggagtt 30372856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 2098953 - 2099017
Alignment:
Q  4 tcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 68  Q
    ||||||| ||||||||||| ||||||||||| || ||||| || ||||||||| |||||||||||    
T  2098953 tcgaacctgggttctctcgaattcaagacctatcattttaccaatagaccaagcctttggagttt 2099017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 36836441 - 36836479
Alignment:
Q  3 ctcgaacccgggttctctcggattcaagacctgtctttt 41  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  36836441 ctcgaactcgggttctctcggattcaagacctgtctttt 36836479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 13047262 - 13047303
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtcttttta 43  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  13047262 gctcgaacccggattctctcgaattcaagacctgtcttttta 13047303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 36380248 - 36380308
Alignment:
Q  7 aacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||| ||| ||||| ||||||||||||||| |||| |||||||||||| ||||| ||||    
T  36380248 aacccgagttttctcgaattcaagacctgtctgtttaccactagaccaagcctttgaagtt 36380308  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 21637918 - 21637869
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactaga 51  Q
    |||| |||||||||||||||| ||||||||||| || ||||| |||||||    
T  21637918 gctcaaacccgggttctctcgaattcaagacctatcattttaccactaga 21637869  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 45137081 - 45137109
Alignment:
Q  2 gctcgaacccgggttctctcggattcaag 30  Q
    |||||||||||||||||||||||||||||    
T  45137081 gctcgaacccgggttctctcggattcaag 45137109  T

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Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 20014478 - 20014413
Alignment:
Q  3 ctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 68  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||    
T  20014478 ctcgaacccgggttctctcggattcaagatctgtctttttaccactagaccaagactttggagttt 20014413  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 15034476 - 15034411
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    ||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  15034476 gctcgaacctgggttctttcggattcaagacctgtctttttaccactagaccaagcctttggagtt 15034411  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 30054553 - 30054618
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    ||||||||||||||||||||||||||||||| || ||||||| |||||||||||| ||||||||||    
T  30054553 gctcgaacccgggttctctcggattcaagacttgactttttaccactagaccaagcctttggagtt 30054618  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 12025202 - 12025136
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 68  Q
    |||||||||| |||||||||| |||||||| |||| |||||| ||||||||||||||||||||||||    
T  12025202 gctcgaacccaggttctctcgaattcaagatctgtatttttaccactagaccaagtctttggagttt 12025136  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 45324023 - 45323962
Alignment:
Q  6 gaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||| ||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  45324023 gaacccaggttctctcggattcaagacctgtcgttttaccactagaccaagcctttggagtt 45323962  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 4573400 - 4573359
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtcttttta 43  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4573400 gctcgaacccgggttctctcggattcaagacctgtcttttta 4573359  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 30370171 - 30370236
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||||| |||||||| |||||| || |||||||||| |||||||||||| ||||||||||    
T  30370171 gctcgaacccggattctctcgaattcaaaacttgtctttttaccactagaccaagcctttggagtt 30370236  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 21090136 - 21090074
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttgga 64  Q
    |||||||||||  |||||||| |||||||||||||| ||||| |||||||||||| |||||||    
T  21090136 gctcgaacccgaattctctcgaattcaagacctgtcattttaccactagaccaagcctttgga 21090074  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 33763365 - 33763431
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagttt 68  Q
    |||||||||  | |||||||| ||||||||||||||||||||  ||||||||||  |||| ||||||    
T  33763365 gctcgaacctagattctctcgaattcaagacctgtctttttactactagaccaaacctttagagttt 33763431  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 35617990 - 35617948
Alignment:
Q  13 ggttctctcggattcaagacctgtctttttatcactagaccaa 55  Q
    |||||||| |||||||||||||||| ||||| |||||||||||    
T  35617990 ggttctcttggattcaagacctgtcattttaccactagaccaa 35617948  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 35163861 - 35163926
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  35163861 gctcgaaccctggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaagtt 35163926  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 14496373 - 14496311
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttgga 64  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||  |||||||    
T  14496373 gctcgaacccgggttctctcggattcaagacctttctttttaccactagaccaaacctttgga 14496311  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 2711845 - 2711910
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaagtctttggagtt 67  Q
    ||||||| || |||||| |||||||||||||||||| ||||| |||||||||||| |||| |||||    
T  2711845 gctcgaatccaggttctatcggattcaagacctgtcattttaccactagaccaagcctttcgagtt 2711910  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 19686938 - 19686991
Alignment:
Q  2 gctcgaacccgggttctctcggattcaagacctgtctttttatcactagaccaa 55  Q
    |||||||||| ||||||||| |||||||||||||| |||||| |||||||||||    
T  19686938 gctcgaacccaggttctctcagattcaagacctgtttttttaccactagaccaa 19686991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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