View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10227_low_5 (Length: 363)
Name: NF10227_low_5
Description: NF10227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10227_low_5 |
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| [»] scaffold0016 (4 HSPs) |
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| [»] scaffold0719 (1 HSPs) |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 140 - 361
Target Start/End: Original strand, 39610 - 39831
Alignment:
| Q |
140 |
tataataaggttttatagcaaacatggcttacaaaaaatttgttcgagcttgggaattacttgttagaaagatgactaggaattataatacaaattaaga |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39610 |
tataataaggttttatagcaaacatggcttacaaaaaatttgttcaagcttgggaatcacttgttagaaagaggactaggaattataatacaaattaaga |
39709 |
T |
|
| Q |
240 |
gtatggttctttggtctgcagttagaactaacttaaaagaaaacataataacagcagttttgtcttagtttcacctctaatactctatactattgttaac |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39710 |
gtatggttctttggtctgcagttagaactaacttaaaagaaaacataataacagcagttttgtcttagtttcacctctaatactctatactattgttaac |
39809 |
T |
|
| Q |
340 |
taatcaaatagaacttatagct |
361 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
39810 |
taatcaaatagaacttatagct |
39831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 140 - 301
Target Start/End: Original strand, 61171 - 61333
Alignment:
| Q |
140 |
tataataaggttttatagcaaacatggcttacaaaaaatttgttcgagcttgggaattacttgttagaaagatgactaggaattat-aatacaaattaag |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
61171 |
tataataaggttttatagcaaacatggcttacaaaaaatttgttcaagcttgggaattacttgttagaaagatgactaggaattataaatacaaattaag |
61270 |
T |
|
| Q |
239 |
agtatggttctttggtctgcagttagaactaacttaaaagaaaacataataacagcagttttg |
301 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
61271 |
agtatggttctttggtttgtagttagaactaacttaaaagaaaacataataatagcagttttg |
61333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 61773 - 61903
Alignment:
| Q |
13 |
caaataaattgtgataagagctttgaaagaaactccaatgagatatcatcaatgaggagctgatcaatctgtctacttccaatcaatgagtttcctccta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
61773 |
caaataaattgtgataagagctttgaaagaaactccaatgagatatcatcaatgaggagctgatcaatctgtctacttccaatcaatgagtttcctccta |
61872 |
T |
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| Q |
113 |
gtttgttcttatcatccactttcatcttata |
143 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
61873 |
gtttgttcttatcatccactttcatcttata |
61903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 48737 - 48778
Alignment:
| Q |
317 |
taatactctatactattgttaactaatcaaatagaacttata |
358 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||||||||||||| |
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|
| T |
48737 |
taatactctatgctattgtcaactactcaaatagaacttata |
48778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0719 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0719
Description:
Target: scaffold0719; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 140 - 361
Target Start/End: Complemental strand, 6054 - 5833
Alignment:
| Q |
140 |
tataataaggttttatagcaaacatggcttacaaaaaatttgttcgagcttgggaattacttgttagaaagatgactaggaattataatacaaattaaga |
239 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||| ||||||| |
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| T |
6054 |
tataataaggttttatagcaaacatgacttacaaaaaatttgttcaagcttgggaatcacttgttataaagaggactaggaattataatacagattaaga |
5955 |
T |
|
| Q |
240 |
gtatggttctttggtctgcagttagaactaacttaaaagaaaacataataacagcagttttgtcttagtttcacctctaatactctatactattgttaac |
339 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5954 |
gtatggttctttggtctctagttagaactaacttaaaagaaaacataataatagcagttttgtcttagtttcacctctaatactctaaactattgttaac |
5855 |
T |
|
| Q |
340 |
taatcaaatagaacttatagct |
361 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
5854 |
taatcaaatagaacttatagct |
5833 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 140 - 361
Target Start/End: Complemental strand, 20127 - 19906
Alignment:
| Q |
140 |
tataataaggttttatagcaaacatggcttacaaaaaatttgttcgagcttgggaattacttgttagaaagatgactaggaattataatacaaattaaga |
239 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||| |||||| ||| |||||||| ||||| || |||||||||||||||||||||||| |
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| T |
20127 |
tataataaggttttatagcaaacatgtcttacaaaaattttgttcaagcttgttaatcacttgttataaagaggattaggaattataatacaaattaaga |
20028 |
T |
|
| Q |
240 |
gtatggttctttggtctgcagttagaactaacttaaaagaaaacataataacagcagttttgtcttagtttcacctctaatactctatactattgttaac |
339 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20027 |
gtatggttctttggtctgtagttagaactattttaaaagaaaacataataatagcagttttgtcttagtttcacctctaatactctatactattgttaac |
19928 |
T |
|
| Q |
340 |
taatcaaatagaacttatagct |
361 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
19927 |
taatcaaatagaacttatagct |
19906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 295
Target Start/End: Original strand, 5305077 - 5305209
Alignment:
| Q |
156 |
agcaaacatggcttacaaaaaatttgttcgagcttgggaattacttgttagaaagatgactaggaattataatacaaattaagagtatggttctttggtc |
255 |
Q |
| |
|
|||| |||||||||| ||||||||||||| |||||||||| |||||||||| ||| ||| | || |||||||| |||||| ||||||||||||| |
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|
| T |
5305077 |
agcagacatggcttataaaaaatttgttcatgcttgggaatcacttgttagagagaggacaaaga---ataataca----aagagtttggttctttggtc |
5305169 |
T |
|
| Q |
256 |
tgcagttagaactaacttaaaagaaaacataataacagca |
295 |
Q |
| |
|
| ||| |||||| |||||||||||||||| ||| |||| |
|
|
| T |
5305170 |
tatagtaagaactttcttaaaagaaaacatattaatagca |
5305209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 295
Target Start/End: Original strand, 15124326 - 15124458
Alignment:
| Q |
156 |
agcaaacatggcttacaaaaaatttgttcgagcttgggaattacttgttagaaagatgactaggaattataatacaaattaagagtatggttctttggtc |
255 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||| |||||||||| ||| ||||| || | |||||| |||||| ||||||||||||| |
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|
| T |
15124326 |
agcaaacatggcttataaaaaatttgttcatgcttgggaatcacttgttagagagaggactaaga---acaataca----aagagtttggttctttggtc |
15124418 |
T |
|
| Q |
256 |
tgcagttagaactaacttaaaagaaaacataataacagca |
295 |
Q |
| |
|
| ||||||| | || |||||||||||||| ||| |||| |
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|
| T |
15124419 |
tatagttagatcatacctaaaagaaaacatattaatagca |
15124458 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 15124490 - 15124539
Alignment:
| Q |
305 |
tagtttcacctctaatactctatactattgttaactaatcaaatagaact |
354 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
15124490 |
tagtttcacctctaatactctatgcttttgttaactactcaaatagaact |
15124539 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 5312453 - 5312502
Alignment:
| Q |
305 |
tagtttcacctctaatactctatactattgttaactaatcaaatagaact |
354 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| ||||||||||| |
|
|
| T |
5312453 |
tagtttcacctctaatactctatgcttttgttaactacgcaaatagaact |
5312502 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 14951177 - 14951128
Alignment:
| Q |
305 |
tagtttcacctctaatactctatactattgttaactaatcaaatagaact |
354 |
Q |
| |
|
||||||||||||| ||||||||| || |||||||||| |||||||||||| |
|
|
| T |
14951177 |
tagtttcacctctgatactctatgcttttgttaactactcaaatagaact |
14951128 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 5291856 - 5291809
Alignment:
| Q |
306 |
agtttcacctctaatactctatactattgttaactaatcaaatagaac |
353 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||||| ||||||||||| |
|
|
| T |
5291856 |
agtttcacctcttatactctatgcttttgttaactactcaaatagaac |
5291809 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 354
Target Start/End: Original strand, 5305244 - 5305290
Alignment:
| Q |
308 |
tttcacctctaatactctatactattgttaactaatcaaatagaact |
354 |
Q |
| |
|
|||||||||| ||||||||| || |||||||||| |||||||||||| |
|
|
| T |
5305244 |
tttcacctcttatactctatgcttttgttaactactcaaatagaact |
5305290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 5284362 - 5284313
Alignment:
| Q |
305 |
tagtttcacctctaatactctatactattgttaactaatcaaatagaact |
354 |
Q |
| |
|
||||||||||||| ||||| ||| || |||||||||| |||||||||||| |
|
|
| T |
5284362 |
tagtttcacctcttatactttatgcttttgttaactactcaaatagaact |
5284313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 5312369 - 5312421
Alignment:
| Q |
243 |
tggttctttggtctgcagttagaactaacttaaaagaaaacataataacagca |
295 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
5312369 |
tggttctttggtctgttattagaacttacttaaaagaaaacatagtaatagca |
5312421 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 346
Target Start/End: Complemental strand, 21177748 - 21177706
Alignment:
| Q |
304 |
ttagtttcacctctaatactctatactattgttaactaatcaa |
346 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
21177748 |
ttagtttcacctctaatactctatgctattgttaactactcaa |
21177706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 21263980 - 21263925
Alignment:
| Q |
305 |
tagtttcacctctaatactctatactattgttaactaa-tcaaatagaacttatag |
359 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
21263980 |
tagtttcacctctaatcttctattctattgttgactaactcaaatagaacttatag |
21263925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 11831740 - 11831682
Alignment:
| Q |
305 |
tagtttcacctctaatactctata--ctattgttaactaatcaaatagaacttatagct |
361 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
11831740 |
tagtttcacctctaatactatatgtgctattgttaactaattacatagaacttatagct |
11831682 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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