View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10227_low_9 (Length: 314)
Name: NF10227_low_9
Description: NF10227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10227_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 295
Target Start/End: Original strand, 9232062 - 9232348
Alignment:
| Q |
9 |
aattagattgcaacgaaaacggtccatcattaactctgttctcggggaaatactatgtacaacacattgattacaagagatttaaaatttcgttaagtga |
108 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
9232062 |
aattagattgcaacaaaaacggtccatcattaaccatgttctccgggaaatactatgtacaacacattgattacaagggatttaaaattcgattaagtga |
9232161 |
T |
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| Q |
109 |
cgcgggtgcagtggaagacactaattgctcttttatcccacggtactttttatacgatcgaagttttaataatgttctttttggcgaagacaattttgga |
208 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
9232162 |
cgcgggtgcagtggaagatgctaattgctcttttatcccacggtactttttatatgatcaaagttttaataatgttctttttggagaagacaattttgga |
9232261 |
T |
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| Q |
209 |
tctgaaccgttcattctggatccaataaatccattgagaatagcgtatttcaattgttcaagtccaataaaagatccacggtacgtt |
295 |
Q |
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| T |
9232262 |
tctgaaccgttcattctggatccaataaatccattgagaatagcgtatttcaattgttcaagtccaataaaagatccacggtacgtt |
9232348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 9386583 - 9386430
Alignment:
| Q |
9 |
aattagattgcaacgaaaacggtccatcattaactctgttctcggggaaatactatgtacaacacattgattacaagagatttaaaatttcgttaagtga |
108 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| |||| |||| |||||||| |
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| T |
9386583 |
aattagattgcaacgaaaatggtccatcattaaccatgttctccgggaaatactatgtacaacacatagattacaagaggtttataattcgattaagtga |
9386484 |
T |
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| Q |
109 |
cgcgggtgcagtggaagacactaattgctcttttatcccacggtactttttata |
162 |
Q |
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|||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |
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| T |
9386483 |
cgcgggtgcagtggaagatgctaattgctctttcatcccgcggtactttttata |
9386430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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