View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10228_high_1 (Length: 576)
Name: NF10228_high_1
Description: NF10228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10228_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 17 - 561
Target Start/End: Original strand, 9566665 - 9567210
Alignment:
| Q |
17 |
agtttagagattcatctctataataacctacaaaaggaagaggaacatagctaaatctcaagtcctatccagaaacttggtcgctaaagatnnnnnnnnn |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9566665 |
agtttagagattcatctctataataacctacaaaaggaagaggaacatagctaaatctcaagtcctatccagaaacttggtcgctaaagataaaaaagaa |
9566764 |
T |
|
| Q |
117 |
nnngaagaacgaacaacaaaagtatgtctatagacctatgatagtgagtcaagtcggcccaagcatcagacaagtctttgctt-aagccgctcggttcac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
9566765 |
aaagaagaacgaacaacaaaagtatgtctatagacctatgatagcaagtcaagtcggcccaagcatcagacaagtctttgctttaagccgctcggttc-c |
9566863 |
T |
|
| Q |
216 |
cctatttaacactcctacatagtctatttattctacgatcttacctacattttggtatcgaacaaaatttgcacatgcgaatgtgctctcatgatttcaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9566864 |
cctatttaacactcctacatagtctatttattctacgatcttacctacattttggtatcgaacaaaatttgcacatacgaatgtgctctcatgatttcaa |
9566963 |
T |
|
| Q |
316 |
tccttgtctaactttaagcctcatcttgtctcgagtcggccc-gtcaataacatctccaagcagaagatgtgcacataactttactcttccacgctaaat |
414 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9566964 |
tccttgtctaactttaagcctcatcttgtgtcgagtcggccctgtcaataacatctccaagcagaagatgtgcacataactttactcttccacgctaaat |
9567063 |
T |
|
| Q |
415 |
tgatagcaacatctgtttgttcaatcctataatctttattgaaatctttcaagagagttctaactgaatcaatcaccgatggactcaacagtaacggtac |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9567064 |
tgatagcaacatctgtttgttcaatcctataatctttattgaaatctttcaagagagttctgactgaatcaatcaccgatggactcaacagtaacggtac |
9567163 |
T |
|
| Q |
515 |
aaaacctgccattgaaaatcttgccttccactttccgaacagttcat |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9567164 |
aaaacctgccattgaaaatcttgccttccactttccgaacagttcat |
9567210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University