View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10228_low_10 (Length: 240)

Name: NF10228_low_10
Description: NF10228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10228_low_10
NF10228_low_10
[»] chr1 (12 HSPs)
chr1 (4-223)||(32191011-32191230)
chr1 (45-111)||(34123148-34123214)
chr1 (50-174)||(31847318-31847442)
chr1 (133-174)||(50441320-50441361)
chr1 (30-125)||(24603022-24603116)
chr1 (45-82)||(9450239-9450276)
chr1 (60-165)||(34062578-34062683)
chr1 (45-91)||(17916174-17916220)
chr1 (30-90)||(8041149-8041210)
chr1 (57-110)||(25485001-25485054)
chr1 (66-111)||(39126966-39127011)
chr1 (36-76)||(44574736-44574776)
[»] chr8 (11 HSPs)
chr8 (30-177)||(38924427-38924574)
chr8 (36-104)||(559988-560056)
chr8 (30-111)||(32729443-32729525)
chr8 (35-110)||(37616274-37616349)
chr8 (36-106)||(10340254-10340324)
chr8 (30-174)||(34273042-34273186)
chr8 (30-82)||(33435404-33435456)
chr8 (57-112)||(21150238-21150293)
chr8 (35-105)||(29204637-29204707)
chr8 (29-75)||(30370054-30370100)
chr8 (30-91)||(8238779-8238840)
[»] chr5 (5 HSPs)
chr5 (30-111)||(23311787-23311868)
chr5 (60-174)||(35943586-35943700)
chr5 (63-108)||(2584160-2584205)
chr5 (54-91)||(9962911-9962948)
chr5 (30-91)||(35943532-35943593)
[»] chr4 (6 HSPs)
chr4 (30-108)||(40423292-40423370)
chr4 (30-81)||(9954548-9954599)
chr4 (63-174)||(24672769-24672880)
chr4 (30-91)||(5961807-5961868)
chr4 (30-91)||(24673012-24673073)
chr4 (60-110)||(43115577-43115627)
[»] chr7 (9 HSPs)
chr7 (30-91)||(101285-101346)
chr7 (30-91)||(48078606-48078667)
chr7 (45-111)||(23018473-23018539)
chr7 (30-90)||(35851960-35852020)
chr7 (117-172)||(21346314-21346369)
chr7 (58-104)||(11687825-11687871)
chr7 (30-104)||(25690745-25690819)
chr7 (36-105)||(41195726-41195795)
chr7 (35-75)||(21346399-21346439)
[»] chr6 (3 HSPs)
chr6 (35-76)||(22682592-22682633)
chr6 (35-111)||(2608366-2608442)
chr6 (36-91)||(20694597-20694652)
[»] chr2 (9 HSPs)
chr2 (30-111)||(34557301-34557382)
chr2 (30-85)||(15538963-15539018)
chr2 (30-173)||(28314577-28314720)
chr2 (30-81)||(21488875-21488926)
chr2 (60-110)||(12670752-12670802)
chr2 (60-110)||(33710562-33710612)
chr2 (130-175)||(14442017-14442062)
chr2 (30-110)||(14442125-14442205)
chr2 (35-91)||(15404949-15405005)
[»] chr3 (6 HSPs)
chr3 (35-91)||(581049-581105)
chr3 (36-111)||(50670070-50670145)
chr3 (30-76)||(25258079-25258125)
chr3 (30-76)||(27177349-27177395)
chr3 (46-91)||(52205031-52205076)
chr3 (36-76)||(37058992-37059032)
[»] scaffold0110 (1 HSPs)
scaffold0110 (45-175)||(31307-31437)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 32191230 - 32191011
Alignment:
Q  4 agcgtgagttaactcgcgctgatactgatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaa 103  Q
    |||||||||||||| || |||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  32191230 agcgtgagttaacttgcactgacactgattagttcaatcattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaatctacgctgaaaa 32191131  T
Q  104 atgtcgagttagtgttaactcataccgagttaaaggaataagtaattttgaaagggagaaaagcaattttctattttttgttgttgtgagattactaaga 203  Q
    ||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32191130 atgtcgagtgagtgttaactcataccgaattaagggaataagtaattttgaaagggagaaaagcaattttcaattttttgttgttgtgagattactaaga 32191031  T
Q  204 ataggaaggtacaactaatg 223  Q
    ||||||||||||||||||||    
T  32191030 ataggaaggtacaactaatg 32191011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 34123214 - 34123148
Alignment:
Q  45 tttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgag 111  Q
    |||||||| ||||||||||||| ||||||||| |||||||||||||| | || ||||||||||||||    
T  34123214 tttttaagctggttcaaccgattttaaaagtgtcagcgtgagttaacttccgctgaaaaatgtcgag 34123148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 31847442 - 31847318
Alignment:
Q  50 aagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagttagtgttaactcataccgagttaaaggaataagtaat 149  Q
    |||| ||||| |||||||||||||||| ||||| ||||||||  ||| ||||||||||||||     |||||||  | | | || |||||||| || |||    
T  31847442 aagtcggttcgaccgatcttaaaagtgtcagcgagagttaactcacgctgaaaaatgtcgagcgtaagttaactattgctgggtcaaaggaatgagcaat 31847343  T
Q  150 tttgaaagggagaaaagcaattttc 174  Q
    |||||||||||||| ||||||||||    
T  31847342 tttgaaagggagaagagcaattttc 31847318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 50441320 - 50441361
Alignment:
Q  133 ttaaaggaataagtaattttgaaagggagaaaagcaattttc 174  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  50441320 ttaaaggaaaaagtaattttgaaagggagaaaagcaattttc 50441361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 24603116 - 24603022
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagttagtgttaactca 125  Q
    |||| ||||| | |||||||||| |||||||||||||||||||||||  | | |||||||||  ||| |||||||||||||||  | |||||||||    
T  24603116 gatcggttcactaattttttaagctggttcaaccgatcttaaaagtgttatcatgagttaactcacg-tgaaaaatgtcgagtgtgagttaactca 24603022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 9450239 - 9450276
Alignment:
Q  45 tttttaagttggttcaaccgatcttaaaagtgccagcg 82  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  9450239 tttttaagtcggttcaaccgatcttaaaagtgccagcg 9450276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 34062683 - 34062578
Alignment:
Q  60 aaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagttagtgttaactcataccgagttaaaggaataagtaattttgaaaggg 159  Q
    ||||||| ||||||||| ||||||||||| ||  ||| |||||||||| |||   | |||||||||||| || ||||  ||||||  |||||||| ||||    
T  34062683 aaccgattttaaaagtgtcagcgtgagttcactcacgctgaaaaatgttgagcgtgagttaactcatacagaattaagagaataaacaattttgataggg 34062584  T
Q  160 agaaaa 165  Q
    ||||||    
T  34062583 agaaaa 34062578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 17916220 - 17916174
Alignment:
Q  45 tttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac 91  Q
    ||||||||| ||||||| |||||||||||||| ||||| ||||||||    
T  17916220 tttttaagtcggttcaatcgatcttaaaagtgtcagcgagagttaac 17916174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 8041149 - 8041210
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccg-atcttaaaagtgccagcgtgagttaa 90  Q
    |||| ||||||| | |||||||||||||||||||| |||||||||||   ||||||||||||    
T  8041149 gatcggttcaatcaatttttaagttggttcaaccgaatcttaaaagttttagcgtgagttaa 8041210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 25485001 - 25485054
Alignment:
Q  57 ttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcga 110  Q
    ||||| |||||||||||||| ||||||||||||||  ||| || ||||||||||    
T  25485001 ttcaaacgatcttaaaagtggcagcgtgagttaactcacgctggaaaatgtcga 25485054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 39126966 - 39127011
Alignment:
Q  66 tcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgag 111  Q
    ||||||||||| ||||||||||||||  ||| ||||||||||||||    
T  39126966 tcttaaaagtgtcagcgtgagttaactcacgctgaaaaatgtcgag 39127011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 44574736 - 44574776
Alignment:
Q  36 ttcaattattttttaagttggttcaaccgatcttaaaagtg 76  Q
    |||||||| ||||||| || |||||||||||||||||||||    
T  44574736 ttcaattactttttaaattagttcaaccgatcttaaaagtg 44574776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 38924427 - 38924574
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagttagtgttaactcatacc 129  Q
    |||| ||||||| | ||||||||| |||||||| ||||||||||||| |||||||||||||| | || ||||||||| |||||  | |||||||||| |     
T  38924427 gatcggttcaatcactttttaagtcggttcaactgatcttaaaagtgacagcgtgagttaacttccgctgaaaaatgccgagtgggagttaactcatgct 38924526  T
Q  130 gagttaaaggaataagtaattttgaaagggagaaaagcaattttctat 177  Q
    |||||||   ||| ||||||||| || ||||||| ||| |||||||||    
T  38924527 gagttaagcaaatgagtaattttaaatgggagaagagccattttctat 38924574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 559988 - 560056
Alignment:
Q  36 ttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaa 104  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||  |||||||||||    
T  559988 ttcaattattttttaagttggttcaaccgattttaaaattgccagcgtgagttaactcacgttgaaaaa 560056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 32729443 - 32729525
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacct-acgttgaaaaatgtcgag 111  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||  |||||| ||  |||||||||||||||||    
T  32729443 gatcagttcaattattttttaagtcggttcaaccgatcttaaaagtgtcagcgacagttaaactgccgttgaaaaatgtcgag 32729525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 37616349 - 37616274
Alignment:
Q  35 gttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcga 110  Q
    ||||||| || ||||||||||| |||||| |||||||||||| ||||||||||||||| ||| |||||||||||||    
T  37616349 gttcaatcatcttttaagttggatcaaccaatcttaaaagtgtcagcgtgagttaacccacgctgaaaaatgtcga 37616274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 10340254 - 10340324
Alignment:
Q  36 ttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatg 106  Q
    |||||| |||||||||||||| ||  ||||||||||||||| ||||||||||||||  |||||||||||||    
T  10340254 ttcaatcattttttaagttgggtcggccgatcttaaaagtgtcagcgtgagttaactcacgttgaaaaatg 10340324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 34273186 - 34273042
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagttagtgttaactcatacc 129  Q
    |||| ||||||| | | ||||||| |||||||||||| ||||||||| |||||||||||||   ||| ||||||||| ||||     |||||||||  |     
T  34273186 gatcggttcaatcactgtttaagtcggttcaaccgattttaaaagtgtcagcgtgagttaattcacgctgaaaaatgccgagcagaagttaactcacgct 34273087  T
Q  130 gagttaaaggaataagtaattttgaaagggagaaaagcaattttc 174  Q
    ||||||| | ||| || |||||| |||||||||| ||||||||||    
T  34273086 gagttaaggaaatgagcaattttaaaagggagaagagcaattttc 34273042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 33435456 - 33435404
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcg 82  Q
    |||||||| ||||| ||||||||| |||||||||||||||||||||| |||||    
T  33435456 gatcagtttaattactttttaagtcggttcaaccgatcttaaaagtgacagcg 33435404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 21150238 - 21150293
Alignment:
Q  57 ttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagt 112  Q
    |||||||||||||||||||| |||||| |||||||  |||||||||||| ||||||    
T  21150238 ttcaaccgatcttaaaagtgtcagcgtaagttaactcacgttgaaaaatatcgagt 21150293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 29204637 - 29204707
Alignment:
Q  35 gttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaat 105  Q
    ||||||| | ||||||||| || ||||| ||||||||||||| |||||| ||||||| |||| ||||||||    
T  29204637 gttcaatcactttttaagtcggatcaactgatcttaaaagtgacagcgtaagttaacttacgctgaaaaat 29204707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 30370100 - 30370054
Alignment:
Q  29 tgatcagttcaattattttttaagttggttcaaccgatcttaaaagt 75  Q
    ||||| ||||||| | |||||||||||||||||||||| ||||||||    
T  30370100 tgatcggttcaatcactttttaagttggttcaaccgattttaaaagt 30370054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 8238779 - 8238840
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac 91  Q
    |||||||||||| | ||||| ||| || |||||||||||||||||||| |  ||||||||||    
T  8238779 gatcagttcaatcacttttttagtcggatcaaccgatcttaaaagtgctattgtgagttaac 8238840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 23311787 - 23311868
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgag 111  Q
    |||| ||| |||||||||||||||  |||||||| |||||||||||| || ||||||||||| |||||| |||||| |||||    
T  23311787 gatcggttaaattattttttaagtcagttcaaccaatcttaaaagtgtcaacgtgagttaacttacgttaaaaaatatcgag 23311868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 35943586 - 35943700
Alignment:
Q  60 aaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagttagtgttaactcataccgagttaaaggaataagtaattttgaaaggg 159  Q
    |||||||||||||||||| || |||| ||||| |||  |||||||||||||||  |  ||||||||  | || |||| ||||| || |||||||||||||    
T  35943586 aaccgatcttaaaagtgctagtgtgaattaacttacactgaaaaatgtcgagtgtgaattaactcacgcggaattaagggaatgagcaattttgaaaggg 35943685  T
Q  160 agaaaagcaattttc 174  Q
      || ||||||||||    
T  35943686 gaaagagcaattttc 35943700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 2584160 - 2584205
Alignment:
Q  63 cgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtc 108  Q
    |||||||||||||||  |||||||||||| ||||||||||||||||    
T  2584160 cgatcttaaaagtgcatgcgtgagttaacttacgttgaaaaatgtc 2584205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 9962948 - 9962911
Alignment:
Q  54 tggttcaaccgatcttaaaagtgccagcgtgagttaac 91  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  9962948 tggttcaaccgatcttaaaaatgctagcgtgagttaac 9962911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 35943593 - 35943532
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac 91  Q
    |||| |||||||||||||||||||  ||||||||||| |||| | || |||| |||||||||    
T  35943593 gatcggttcaattattttttaagtcagttcaaccgattttaagaatgtcagcatgagttaac 35943532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 40423370 - 40423292
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtc 108  Q
    |||| ||||||| | ||||||||| ||||||||  |||||||||||| |||| ||||||||| | ||||||||||||||    
T  40423370 gatcggttcaatcactttttaagtcggttcaacaaatcttaaaagtgtcagcatgagttaacttccgttgaaaaatgtc 40423292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 9954548 - 9954599
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagc 81  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||||| ||||    
T  9954548 gatcaattcaattattttttaagttgggtcaatcgatcttaaaagtgacagc 9954599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 174
Target Start/End: Original strand, 24672769 - 24672880
Alignment:
Q  63 cgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagttagtgttaactcataccgagttaaaggaataagtaattttgaaagggaga 162  Q
    |||||| || ||||||| |||||||||||   || ||||||||| |||||  | ||||||||  || |||| |||||||| | |||||||||| ||||||    
T  24672769 cgatctaaatagtgccaacgtgagttaactaccgctgaaaaatgccgagtgtgggttaactcccactgagtcaaaggaatgattaattttgaatgggaga 24672868  T
Q  163 aaagcaattttc 174  Q
    | ||||||||||    
T  24672869 agagcaattttc 24672880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 5961807 - 5961868
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac 91  Q
    |||||||||||| | |||||||||||| ||||||||||||||||   ||||| |||||||||    
T  5961807 gatcagttcaatcactttttaagttggctcaaccgatcttaaaaacaccagcatgagttaac 5961868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 24673073 - 24673012
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac 91  Q
    |||||||||||| | |||||| || || |||||| ||||||||||||||| |||||||||||    
T  24673073 gatcagttcaatcactttttatgtcgggtcaaccaatcttaaaagtgccaacgtgagttaac 24673012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 43115627 - 43115577
Alignment:
Q  60 aaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcga 110  Q
    ||||||||||||||||| ||| ||||||||||  ||| |||||||||||||    
T  43115627 aaccgatcttaaaagtgtcagtgtgagttaactcacgctgaaaaatgtcga 43115577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 101346 - 101285
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac 91  Q
    |||||||||||| | |||||||||  | ||||||||||||||||||| ||||||||||||||    
T  101346 gatcagttcaatcactttttaagtcaggtcaaccgatcttaaaagtgtcagcgtgagttaac 101285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 48078606 - 48078667
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac 91  Q
    ||||| |||||| | ||||||||| ||||||||||||||||||||||||| || ||||||||    
T  48078606 gatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaac 48078667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 23018539 - 23018473
Alignment:
Q  45 tttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgag 111  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||||    |||||||||||| ||||    
T  23018539 tttttaagtcggtttaaccgatcttaaaagtgccagcgtcagttaattgccgttgaaaaatgccgag 23018473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 35852020 - 35851960
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaa 90  Q
    |||| ||||||| | ||| ||||| |||||||||||||||||||||| ||| |||||||||    
T  35852020 gatcggttcaatcactttctaagtcggttcaaccgatcttaaaagtgtcagtgtgagttaa 35851960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 21346369 - 21346314
Alignment:
Q  117 gttaactcataccgagttaaaggaataagtaattttgaaagggagaaaagcaattt 172  Q
    |||||||||| | |||||||  |||||||||||||||||| |||||| ||||||||    
T  21346369 gttaactcatgctgagttaagagaataagtaattttgaaaaggagaagagcaattt 21346314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 11687825 - 11687871
Alignment:
Q  58 tcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaa 104  Q
    ||||||||||||||||||| ||||||||||||||  ||| |||||||    
T  11687825 tcaaccgatcttaaaagtgacagcgtgagttaactcacgctgaaaaa 11687871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 25690745 - 25690819
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaa 104  Q
    |||| ||||||| | ||||||||  |||||||||||||||||||||| |||| ||| |||||  ||| |||||||    
T  25690745 gatcggttcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattaactcacgctgaaaaa 25690819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 41195726 - 41195795
Alignment:
Q  36 ttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaat 105  Q
    |||||| | |||||||| ||||||||| ||||||||||||| || | ||||||||| | || ||||||||    
T  41195726 ttcaatcactttttaagctggttcaactgatcttaaaagtgtcaacttgagttaacttccgctgaaaaat 41195795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 21346399 - 21346439
Alignment:
Q  35 gttcaattattttttaagttggttcaaccgatcttaaaagt 75  Q
    ||||||| | ||||||||||||||||||||| |||||||||    
T  21346399 gttcaatcactttttaagttggttcaaccgaccttaaaagt 21346439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 22682592 - 22682633
Alignment:
Q  35 gttcaattattttttaagttggttcaaccgatcttaaaagtg 76  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  22682592 gttcaatcattttttaagttggttcaaccgatcttaaaagtg 22682633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 2608442 - 2608366
Alignment:
Q  35 gttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgag 111  Q
    ||||||| | ||||||||||||||||||| || |||||| ||| ||||||||||||   ||| |||||||| |||||    
T  2608442 gttcaatcactttttaagttggttcaaccaattttaaaaatgctagcgtgagttaaatcacgctgaaaaatatcgag 2608366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 20694652 - 20694597
Alignment:
Q  36 ttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac 91  Q
    |||||| | |||||||||||  |||||| ||||||||||||||| |||||||||||    
T  20694652 ttcaatcactttttaagttgagtcaaccaatcttaaaagtgccaccgtgagttaac 20694597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 34557382 - 34557301
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgag 111  Q
    |||| ||||||| ||||||||| | ||||||| |||||||||||||||  | ||||||||||  ||| ||||||||||||||    
T  34557382 gatctgttcaatcattttttaaatcggttcaatcgatcttaaaagtgctggtgtgagttaactcacgctgaaaaatgtcgag 34557301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 15538963 - 15539018
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtga 85  Q
    |||| ||||||||| ||||||||| ||||||| |||||||||||||| ||||||||    
T  15538963 gatcggttcaattactttttaagtcggttcaatcgatcttaaaagtgtcagcgtga 15539018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 28314720 - 28314577
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac-ctacgttgaaaaatgtcgagttagtgttaactcatac 128  Q
    |||| ||||||| | ||||||| |||||| ||||||||||||||||| ||||  |||||||| ||| ||||||||||  | ||  |  |||||||   ||    
T  28314720 gatcggttcaatcactttttaaattggttgaaccgatcttaaaagtgtcagcaggagttaactcta-gttgaaaaataccaagcaacagttaactttaac 28314622  T
Q  129 cgagttaaaggaataagtaattttgaaagggagaaaagcaatttt 173  Q
     ||||||| ||||| | |||||||||||||||||| | |||||||    
T  28314621 tgagttaatggaatgaataattttgaaagggagaagaacaatttt 28314577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 21488875 - 21488926
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagc 81  Q
    |||| ||||||| |||||||||||  ||||||||||||||||||||| ||||    
T  21488875 gatcggttcaatcattttttaagtcagttcaaccgatcttaaaagtgtcagc 21488926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 12670802 - 12670752
Alignment:
Q  60 aaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcga 110  Q
    ||||||||||||||||| |||||||||||||   |||||| ||||||||||    
T  12670802 aaccgatcttaaaagtgtcagcgtgagttaagtcacgttgcaaaatgtcga 12670752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 33710612 - 33710562
Alignment:
Q  60 aaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcga 110  Q
    ||||||||||||||||| |||||| |||||||  ||| |||||||||||||    
T  33710612 aaccgatcttaaaagtgtcagcgtaagttaactcacgctgaaaaatgtcga 33710562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 14442062 - 14442017
Alignment:
Q  130 gagttaaaggaataagtaattttgaaagggagaaaagcaattttct 175  Q
    |||||||  |||| |||||||||||||||||||| |||||||||||    
T  14442062 gagttaagagaatgagtaattttgaaagggagaagagcaattttct 14442017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 14442125 - 14442205
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcga 110  Q
    ||||||| |||| | ||||||||  | |||||| ||||||||| |||| |||||||||||||| ||  |||||||| ||||    
T  14442125 gatcagtacaatcactttttaagccgattcaactgatcttaaaggtgctagcgtgagttaacccacactgaaaaatatcga 14442205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 15404949 - 15405005
Alignment:
Q  35 gttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac 91  Q
    ||||||| | ||||||||| || ||||||||| ||||||||| || |||||||||||    
T  15404949 gttcaatcactttttaagtcgggtcaaccgattttaaaagtgtcaacgtgagttaac 15405005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 581105 - 581049
Alignment:
Q  35 gttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac 91  Q
    ||||||| | |||||||||  |||||||||||||||||||| |||||||||||||||    
T  581105 gttcaataactttttaagtctgttcaaccgatcttaaaagtaccagcgtgagttaac 581049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 50670145 - 50670070
Alignment:
Q  36 ttcaattattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgag 111  Q
    |||||| |||||||| ||  ||||||||||| ||||||||| |||||| |||||||  ||| ||||||||||||||    
T  50670145 ttcaatcattttttacgtaagttcaaccgattttaaaagtgtcagcgtaagttaactcacgctgaaaaatgtcgag 50670070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 25258125 - 25258079
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtg 76  Q
    |||||||||||| | ||||||||| ||||||||||||||||||||||    
T  25258125 gatcagttcaatcactttttaagtcggttcaaccgatcttaaaagtg 25258079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 27177349 - 27177395
Alignment:
Q  30 gatcagttcaattattttttaagttggttcaaccgatcttaaaagtg 76  Q
    |||| ||||||| |||||||||||||| |||||||||||||||||||    
T  27177349 gatcggttcaatcattttttaagttgggtcaaccgatcttaaaagtg 27177395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 52205076 - 52205031
Alignment:
Q  46 ttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaac 91  Q
    |||||||| || ||||||||||||||||||| |||| |||||||||    
T  52205076 ttttaagtcgggtcaaccgatcttaaaagtgtcagcatgagttaac 52205031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 37059032 - 37058992
Alignment:
Q  36 ttcaattattttttaagttggttcaaccgatcttaaaagtg 76  Q
    |||||| ||||||||||| | ||||||||||||||||||||    
T  37059032 ttcaatcattttttaagtcgattcaaccgatcttaaaagtg 37058992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 175
Target Start/End: Complemental strand, 31437 - 31307
Alignment:
Q  45 tttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaacctacgttgaaaaatgtcgagttagtgttaactcataccgagttaaaggaataa 144  Q
    |||||||| |||||||||| ||||||||| ||   | ||||||||||  ||| ||||||||| |||    | |||||||||| | || ||||  |||| |    
T  31437 tttttaagctggttcaaccaatcttaaaaatgtatgtgtgagttaactcacgctgaaaaatgccgaacgtgagttaactcatgctgaattaagagaatga 31338  T
Q  145 gtaattttgaaagggagaaaagcaattttct 175  Q
    | |||||||||||| |||| |||||||||||    
T  31337 gcaattttgaaaggaagaagagcaattttct 31307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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