View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10228_low_13 (Length: 239)
Name: NF10228_low_13
Description: NF10228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10228_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 13608339 - 13608561
Alignment:
| Q |
1 |
aaatgacattgttgcattcagagatgatacaaacctnnnnnnnggggaacatatatcatccaagcttgaacaagccattgaaggatcccatattttgatt |
100 |
Q |
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| T |
13608339 |
aaatgacattgttgcattcagagatgatacaaacctaaaaaaaggggaacatatatcatccaagcttgaacaagccattgaaggatcccatattttgatt |
13608438 |
T |
|
| Q |
101 |
gttatcttctcaagaaactatgcttcttccacatggtgcttacaagaactggcaaaaattgctgaatactttgaagtatcaggacaaactgttctaccta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608439 |
gttatcttctcaagaaactatgcttcttccacatggtgcttacaagaactggcaaaaattgctgaatactttgaagtatcaggacaaactgttctaccta |
13608538 |
T |
|
| Q |
201 |
ttttctatgatgtgagtccatct |
223 |
Q |
| |
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|||||||||||| |||||||||| |
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| T |
13608539 |
ttttctatgatgcgagtccatct |
13608561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 44 - 223
Target Start/End: Original strand, 31244361 - 31244540
Alignment:
| Q |
44 |
ggggaacatatatcatccaagcttgaacaagccattgaaggatcccatattttgattgttatcttctcaagaaactatgcttcttccacatggtgcttac |
143 |
Q |
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|||||| |||||||||| ||||| |||||| ||||||||||||| |||||||||||||||||| ||||| |||||||||||||| || |||||||| |
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| T |
31244361 |
ggggaaaatatatcatctgagcttctacaagctattgaaggatcccgtattttgattgttatcttttcaaggaactatgcttcttcaacgtggtgcttga |
31244460 |
T |
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| Q |
144 |
aagaactggcaaaaattgctgaatactttgaagtatcaggacaaactgttctacctattttctatgatgtgagtccatct |
223 |
Q |
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| T |
31244461 |
aggaactagtaaagattgctgaatgcattgaagtaacaggacaaattgttctacctattttctatgatgtggatccatct |
31244540 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 6473221 - 6473087
Alignment:
| Q |
89 |
catattttgattgttatcttctcaagaaactatgcttcttccacatggtgcttacaagaactggcaaaaattgctgaatactttgaagtatcaggacaaa |
188 |
Q |
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||||| |||||||| || ||||||| ||||||||||||||||||||||||||| |||||| ||| ||| |||||||| | | | | ||| |||||||| |
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| T |
6473221 |
catatcttgattgtaattttctcaaaaaactatgcttcttccacatggtgcttgcaagaattggtaaatattgctgattgcatccatgtacaaggacaaa |
6473122 |
T |
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| Q |
189 |
ctgttctacctattttctatgatgtgagtccatct |
223 |
Q |
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| T |
6473121 |
ctgttctacctattttctatgatgtgagtccatct |
6473087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 14723997 - 14724049
Alignment:
| Q |
171 |
ttgaagtatcaggacaaactgttctacctattttctatgatgtgagtccatct |
223 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| | |||||||||| |
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| T |
14723997 |
ttgaagtatcaggacaaattgttctacctattttctatgacgggagtccatct |
14724049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 17599853 - 17599801
Alignment:
| Q |
171 |
ttgaagtatcaggacaaactgttctacctattttctatgatgtgagtccatct |
223 |
Q |
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||||| |||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
17599853 |
ttgaactatcaggacaaactgttctacctattttctatgacgggagtccatct |
17599801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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