View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10228_low_15 (Length: 229)
Name: NF10228_low_15
Description: NF10228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10228_low_15 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 14513697 - 14513473
Alignment:
| Q |
7 |
tttgtggaggaagataatagtacccaagtgagagaagggtatagattctatacatcaaaaatcac--acacaagaaaaagacatgttcagatttttattc |
104 |
Q |
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| T |
14513697 |
tttgtggaggaagataatagtacccaagtgagaaaagggtatagattatatacaccaaaaaccatcaacacaagaaaaagacatgttcagatttttattc |
14513598 |
T |
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| Q |
105 |
cattctcaaaaatatccaaggtgaagaacaaaaccaatgaaaaagacacataaaccttttcattcattaatttcaagtttaagaacaagaatcttaatat |
204 |
Q |
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| T |
14513597 |
cattctcaaaaatatccaaggtgaagaacaaaaccaatgaaaaagacacataaaccttctcattgattaatttcaagtttaggaacaagaatcttaatat |
14513498 |
T |
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| Q |
205 |
cactacaatatttccttcacctact |
229 |
Q |
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||||||||||||||||||||||||| |
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| T |
14513497 |
cactacaatatttccttcacctact |
14513473 |
T |
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