View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10228_low_4 (Length: 330)
Name: NF10228_low_4
Description: NF10228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10228_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 135875 - 136107
Alignment:
| Q |
18 |
atacttgatcttttcatcatctactaggtcacattgcattatccttatattatgattttcataaaaggtgtgtttgattctaatttcctctatcattact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
135875 |
atacttgatcttttcatcatctactaggtcacattgcattatccttatattatgattttcataaaaggtgtgtttgattctaatttcctctatcattact |
135974 |
T |
|
| Q |
118 |
gttgtagatggaatgtgtaaatctcagacacaagaactagcttcagccaaaagaaatatgtggaggcattgagtcgggaagacttttatttactcaaaga |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
135975 |
gttgtagatggaatgtgcaaatctcagacacaaggactagcttcagccataagaaatatgtggaggcattgagtcgggaagacttttatttactcaaaga |
136074 |
T |
|
| Q |
218 |
atgttcgtggctcttgagcagaggttattgaca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
136075 |
atgttcgtggctcttgagcagaggttattgaca |
136107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 137029 - 137088
Alignment:
| Q |
256 |
cactaaaagtcatgttttaatctcacattccttttatattgagggttaccatttattcat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
137029 |
cactaaaagtcatgttttaatctcacattccttttatattgagggttaccatttattcat |
137088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 157844 - 157909
Alignment:
| Q |
248 |
acatgattcactaaaagtcatgttttaatctca-cattccttttatattgagggttaccatttatt |
312 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| ||||| |
|
|
| T |
157844 |
acatgattcacttaaagtcatgttttaatctcaccattcgatttatattgagggttaccacttatt |
157909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 246
Target Start/End: Complemental strand, 36085101 - 36084900
Alignment:
| Q |
49 |
cattgcattatccttatattatgattttcataaaaggtgtgtttgattctaatttcctctatc-attactg--ttgtagatggaatgtgtaaatctcaga |
145 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||| || |||| ||| |||||||||| |||| || || ||||||||| || ||||||||| |
|
|
| T |
36085101 |
cattgcattatccctatattatgattttcataaaagatgtcttcgattgtaacttcctctatcaattaatgtcttatagatggaaaatgagaatctcaga |
36085002 |
T |
|
| Q |
146 |
-cacaagaactagcttcagccaaaagaaatatgtggaggcattgagtcgggaagacttttatttactcaaagaatgttcgtggctcttgagcagaggtta |
244 |
Q |
| |
|
||||||| ||| |||||||| ||| |||| || |||||||||| || ||||||| ||||| | |||||||||||| ||| |||| || |||||||| |
|
|
| T |
36085001 |
gaacaagaagtagtttcagccataagcaatacgttgaggcattgactctggaagacatttatccattcaaagaatgtttgtgactctgaagtagaggtta |
36084902 |
T |
|
| Q |
245 |
tt |
246 |
Q |
| |
|
|| |
|
|
| T |
36084901 |
tt |
36084900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 34549170 - 34549080
Alignment:
| Q |
117 |
tgttgtagatggaatgtgtaaatctcagaca-caagaactagcttcagccaaaagaaatatgtggaggcattgagtcgggaagacttttat |
206 |
Q |
| |
|
|||| ||||||||| || |||||||||| | ||||||||||||||||||| ||| ||||||| |||||||||| || ||||||||||||| |
|
|
| T |
34549170 |
tgttatagatggaaaatgaaaatctcagagaacaagaactagcttcagccataagcaatatgttgaggcattgaatctggaagacttttat |
34549080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 34560721 - 34560606
Alignment:
| Q |
49 |
cattgcattatccttatattatgattttcataaaaggt----gtgtttgattctaatttcctctatcattactgttgtagatggaatgtgtaaatctcag |
144 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| || | ||||||||| ||||| |||||||||| || ||||| ||| || | ||| || |
|
|
| T |
34560721 |
cattgcattatccctatattatgattttcataaaaggtgtacgtctctgattctaacttcctttatcattactcttatagatagaaaatgagattctaag |
34560622 |
T |
|
| Q |
145 |
acacaagaactagctt |
160 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34560621 |
acacaagaactagctt |
34560606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University