View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10228_low_5 (Length: 281)
Name: NF10228_low_5
Description: NF10228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10228_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 3407721 - 3407985
Alignment:
| Q |
1 |
gtcacaacgccaacaccacaaacctttactgatagtttgaagttcgtctaagaggtaagtaaagtctggtcaacaattgttccattcaggaatcaaactc |
100 |
Q |
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| T |
3407721 |
gtcacaacgccaacaccacaaacctctactgatagtttgaagttcgtttaagaggtaagtaaagtctggtcaacaactgttccattcaggaatcaaactc |
3407820 |
T |
|
| Q |
101 |
agatcctagtgaaaaaatcgccttttgatagagctcgtcagtcacttgagctcaattgtttgatttaattgtatccnnnnnnnnaacaaagggaacttta |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||| ||||||||| |
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| T |
3407821 |
agatcctcgtgaaaaaatcgccttttgatagagctcgtcagtcacttgagttcaattgtttgatttaattgtattc-tttttttaacaaaaggaacttta |
3407919 |
T |
|
| Q |
201 |
tcgtaatgtgttaaagttgtattgaatacaatcctatttaaaagaggtatttgagtcaataaaaac |
266 |
Q |
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| T |
3407920 |
tcataatgtgttaaagttgtattgaatacaatcctatttaaaagaggtatttgagtcaataaaaac |
3407985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 5404489 - 5404443
Alignment:
| Q |
53 |
aggtaagtaaagtctggtcaacaattgttccattcaggaatcaaact |
99 |
Q |
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| T |
5404489 |
aggtaagtaaagtctggccaataattgttcccatcaggaatcaaact |
5404443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 34964236 - 34964188
Alignment:
| Q |
52 |
gaggtaagtaaagtctggtcaacaattgttccattcaggaatcaaactc |
100 |
Q |
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|||||||||||||||||||||| ||||||||| | ||||||| ||||| |
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| T |
34964236 |
gaggtaagtaaagtctggtcaataattgttcccattaggaatcgaactc |
34964188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 10007991 - 10008036
Alignment:
| Q |
52 |
gaggtaagtaaagtctggtcaacaattgttccattcaggaatcaaa |
97 |
Q |
| |
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|||||||||||||||| ||||| |||||||||| ||||||||||| |
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| T |
10007991 |
gaggtaagtaaagtcttgtcaagaattgttccaaccaggaatcaaa |
10008036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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