View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10228_low_7 (Length: 250)

Name: NF10228_low_7
Description: NF10228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10228_low_7
NF10228_low_7
[»] chr8 (2 HSPs)
chr8 (1-237)||(12360190-12360428)
chr8 (121-194)||(13866279-13866352)
[»] chr7 (2 HSPs)
chr7 (131-210)||(30969824-30969903)
chr7 (128-210)||(38603079-38603161)
[»] chr5 (2 HSPs)
chr5 (131-210)||(18345770-18345849)
chr5 (122-207)||(35732276-35732361)
[»] chr6 (1 HSPs)
chr6 (131-203)||(5736458-5736530)
[»] chr4 (1 HSPs)
chr4 (131-210)||(29391230-29391310)
[»] chr1 (2 HSPs)
chr1 (148-195)||(51672545-51672592)
chr1 (131-207)||(18280404-18280480)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 12360428 - 12360190
Alignment:
Q  1 tatgttagttatatgtaaggatatcttgtaattcaatgcttttatataaagttgcttatattcattgaaaaagaataatcactgttctaatgtggctatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12360428 tatgttagttatatgtaaggatatcttgtaattcaatgcttttatataaagttgcttatattcattgaaaaagaataatcactgttctaatgtggctatt 12360329  T
Q  101 taatcgttgttc-ttttgggat-caacttctttaaagtgagcaacttattttaaagtgtaaagtgggcaatatccaccgataattaacaaattaaaggtc 198  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12360328 taatcgttgttctttttgggatccaacttctttaaagtgagcaactcattttaaagtgtaaagtgggcaatatccactgataattaacaaattaaaggtc 12360229  T
Q  199 gatattgtaggttcactttagaggatccttgcccgttct 237  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12360228 gatattgtaggttcactttagaggatccttgcccgttct 12360190  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 13866352 - 13866279
Alignment:
Q  121 tcaacttctttaaagtgagcaacttattttaaagtgtaaagtgggcaatatccaccgataattaacaaattaaa 194  Q
    |||||| ||||||||||||||||| | ||||||||||||| || |||||||| |||| ||||||| ||||||||    
T  13866352 tcaactcctttaaagtgagcaactcactttaaagtgtaaattgagcaatatcaaccgttaattaataaattaaa 13866279  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 30969903 - 30969824
Alignment:
Q  131 taaagtgagcaacttattttaaagtgtaaagtgggcaatatccaccgataattaacaaattaaaggtcgatattgtaggt 210  Q
    |||||||||||||| | |||| ||||||||||| |||||||| |||| ||||||||||||||| ||| ||| ||||||||    
T  30969903 taaagtgagcaactaactttagagtgtaaagtgcgcaatatcaaccgttaattaacaaattaagggttgattttgtaggt 30969824  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 210
Target Start/End: Complemental strand, 38603161 - 38603079
Alignment:
Q  128 ctttaaagtgagcaacttattttaaagtgtaaagtgggcaatatccaccgataattaacaaattaaaggtcgatattgtaggt 210  Q
    ||||||| ||||||||| | |||| |||||||||||   |||||| |||| ||||||| |||| |||||| ||||||||||||    
T  38603161 ctttaaaatgagcaactcactttagagtgtaaagtgaataatatcaaccgttaattaaaaaatcaaaggtagatattgtaggt 38603079  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 18345849 - 18345770
Alignment:
Q  131 taaagtgagcaacttattttaaagtgtaaagtgggcaatatccaccgataattaacaaattaaaggtcgatattgtaggt 210  Q
    |||||||||||| | | |||| |||||||||||||||||||| |||| ||||||| |||| ||| ||  |||||||||||    
T  18345849 taaagtgagcaattcactttagagtgtaaagtgggcaatatcaaccgttaattaataaatgaaaagtatatattgtaggt 18345770  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 35732276 - 35732361
Alignment:
Q  122 caacttctttaaagtgagcaacttattttaaagtgtaaagtgggcaatatccaccgataattaacaaattaaaggtcgatattgta 207  Q
    ||||| ||||||||||| ||||| | |||| |||||||||||   |||||| |||| ||| |||||||| |||||| || ||||||    
T  35732276 caactcctttaaagtgaacaactcactttagagtgtaaagtgactaatatcgaccgttaaataacaaatcaaaggtagacattgta 35732361  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 5736530 - 5736458
Alignment:
Q  131 taaagtgagcaacttattttaaagtgtaaagtgggcaatatccaccgataattaacaaattaaaggtcgatat 203  Q
    |||||||||||||| ||| |||||| |||||||| ||||||| ||   |||||||||||||||| || |||||    
T  5736530 taaagtgagcaactcattctaaagtataaagtggacaatatcaactattaattaacaaattaaaagtagatat 5736458  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 29391310 - 29391230
Alignment:
Q  131 taaagtgagcaactta-ttttaaagtgtaaagtgggcaatatccaccgataattaacaaattaaaggtcgatattgtaggt 210  Q
    ||||| |||||||| | ||||| |||||||||| ||||||||| || | ||||||||||||||||||   |||||||||||    
T  29391310 taaagggagcaactcacttttagagtgtaaagtaggcaatatcaactgttaattaacaaattaaaggcatatattgtaggt 29391230  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 51672592 - 51672545
Alignment:
Q  148 tttaaagtgtaaagtgggcaatatccaccgataattaacaaattaaag 195  Q
    |||| |||||||||||| ||||||| |||| |||||||||||||||||    
T  51672592 tttagagtgtaaagtggacaatatcaaccgttaattaacaaattaaag 51672545  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 18280404 - 18280480
Alignment:
Q  131 taaagtgagcaacttattttaaagtgtaaagtgggcaatatccaccgataattaacaaattaaaggtcgatattgta 207  Q
    |||||||||||||| | |||| ||||||||||| | |||||  ||||  ||| ||||||||||||||  ||||||||    
T  18280404 taaagtgagcaactcactttagagtgtaaagtgagtaatataaaccgtcaatgaacaaattaaaggtaaatattgta 18280480  T

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