View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10229_high_13 (Length: 249)
Name: NF10229_high_13
Description: NF10229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10229_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 29468532 - 29468296
Alignment:
| Q |
1 |
tcaaacaagaaaaggttaatgttgtcttcatgcctcgttgagcttacaatgaaaggtttcaaaagacctaccggcatgtccaacctataaagtttttgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29468532 |
tcaaacaagaaaaggttaatgttgtcttcatgcctcgttgagcttacaatgaaaggtttcaaaagacctaccggcatgtccaacctataaagtttttgag |
29468433 |
T |
|
| Q |
101 |
catcaacctcgaccaaaactaaaacactaccttatttgttgcacagctgaatcacaaagtatgtaannnnnnnngtccttattacatgtcttcggcaaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29468432 |
catcaacctcgaccaaaactaaaacactaccttatttctcgcacagctgaatcacaaagtatgtaa--ttttttgtccttattacatgtcttcggcaaga |
29468335 |
T |
|
| Q |
201 |
gaatcacacaattctcctctttttggcattgtttttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29468334 |
gaatcacacaattctcctctttttggcattgtttttcat |
29468296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 14999603 - 14999520
Alignment:
| Q |
69 |
taccggcatgtccaacctataaagtttttgagcatcaacctcgaccaaaactaaaacactaccttatttgttgcacagctgaatca |
154 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
14999603 |
taccagcatgtccaacctaaaaagttt--gagcatcaacctcattcaaaactaaaaaactacattatttgttgcacagctgaatca |
14999520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 14999501 - 14999445
Alignment:
| Q |
181 |
attacatgtcttcggcaagagaatcacacaattctcctctttttggcattgtttttc |
237 |
Q |
| |
|
|||||||||||| |||| |||||||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
14999501 |
attacatgtctttggcatgagaatcacataattttcctctttttgtcattgtttttc |
14999445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University