View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10229_high_3 (Length: 362)
Name: NF10229_high_3
Description: NF10229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10229_high_3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 362
Target Start/End: Original strand, 2699293 - 2699644
Alignment:
| Q |
14 |
agaccggtagtacatcactatttttgcaacatgaagctgaagaaaaggaaaaaatatgcacaagttaatatcatttatcaatcatctgatagggnnnnnn |
113 |
Q |
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| T |
2699293 |
agaccggtagtacatcactatttttggaacatgaagctgaagaaaaggaaaaaatatgtacaagttaatatcatttatcaatcatctgatagggaaaaaa |
2699392 |
T |
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| Q |
114 |
nntaggtgtgatgaatatgaatatgaatgtttcacctttgagtcgtctcttgtacctccataccaacaatacaatgattcctatgcaaattaaccccgct |
213 |
Q |
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| T |
2699393 |
aataggtgtgatgaatatgaatatgaatgtttcacctttgagttgtctcttgtacctccataccaacaatacaatgattcctatgcaaattaaccccgct |
2699492 |
T |
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| Q |
214 |
agagaagttaatattatcaccatcataatcttttca---ttccctccatcgcctgtatttcgagacaaaagatataatcctgttattaactaatactcta |
310 |
Q |
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| T |
2699493 |
agagaagttaatattatcaccatcataatcttttcatttttccctccatcgcctgtatttcgagacaaaagatataatcctgttatttactaatactcta |
2699592 |
T |
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| Q |
311 |
acaacaattacacttcaattgacagtgttattcggctaattagctataacat |
362 |
Q |
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| T |
2699593 |
acaacaattacacttcaattgacagtgttattcggctaattagctataacat |
2699644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 2691709 - 2691829
Alignment:
| Q |
129 |
tatgaatatgaatg----tttcacctttgagtcgtctcttgtacctccataccaacaatacaatgattcctatgcaaattaaccccgctagagaagttaa |
224 |
Q |
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| T |
2691709 |
tatgaatatgaatgagtatttcacctttgagttttgtcttgtacctccataccaacaataccaatattcctaggcagattaaccctgctataacagttaa |
2691808 |
T |
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| Q |
225 |
tattatcaccatcataatctt |
245 |
Q |
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| T |
2691809 |
tattatcacaatcataatctt |
2691829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 14520885 - 14520956
Alignment:
| Q |
169 |
ctccataccaacaatacaatgattcctatgcaaattaaccccgctagagaagttaatattatcaccatcata |
240 |
Q |
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| T |
14520885 |
ctccataccaacaatacaaagattcctaggcagattaaccctgttacagcagttgatataatcacaatcata |
14520956 |
T |
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