View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10229_high_6 (Length: 339)
Name: NF10229_high_6
Description: NF10229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10229_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 3929116 - 3929211
Alignment:
| Q |
5 |
tgaaaggctgaaaagattatgctgtggttataaaagttagagatcatagtaaatatttgatccaatggtcaccatttgatcctctcatcctctcatt |
101 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3929116 |
tgaaagggtgaaaagattacgctgtggttataaaagttagagatcatagtaaaga-ttgatccaatggtcaccatttgatcctctcatcctctcatt |
3929211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 6354682 - 6354772
Alignment:
| Q |
6 |
gaaaggctgaaaagattatgctgtggttataaaagttagagatcatagtaaatatttgatccaatggtcaccatttgatcctctcatcctct |
97 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6354682 |
gaaaggctgaaaatattacaatgtggttataaaagttagagatcatagtaaaga-ttgatccaatggtcaccatttgattctctcatcctct |
6354772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 23531202 - 23531119
Alignment:
| Q |
15 |
aaaagattatgctgtggttataaaagttagagatcatagtaaatatttgatccaatggtcaccatttgatcctctcatcctctca |
99 |
Q |
| |
|
||||||||| |||| ||||| ||| ||| | ||||| ||||| |||| |||||||||||| |||||||||||||| ||||||| |
|
|
| T |
23531202 |
aaaagattaagctgcagttattaaaattaaacatcatggtaaagattt-atccaatggtcaggatttgatcctctcaccctctca |
23531119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 44911984 - 44912049
Alignment:
| Q |
6 |
gaaaggctgaaaagattatgctgtggttataaaagttagagatcatagtaaatatttgatccaatg |
71 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44911984 |
gaaaggctgaaaagattacgctgtggttataaaagttagagatcatagtaaagatttgatccaatg |
44912049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 23244890 - 23244852
Alignment:
| Q |
63 |
gatccaatggtcaccatttgatcctctcatcctctcatt |
101 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
23244890 |
gatccaatggtcaccatttgatcatctcaccctctcatt |
23244852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 6437366 - 6437404
Alignment:
| Q |
63 |
gatccaatggtcaccatttgatcctctcatcctctcatt |
101 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
6437366 |
gatccaatggtcaccatttgatcatctcaccctctcatt |
6437404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University