View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10229_high_7 (Length: 332)
Name: NF10229_high_7
Description: NF10229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10229_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 44911688 - 44911828
Alignment:
| Q |
1 |
gaatttaactaccataaaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggttcatcgtcatcac |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44911688 |
gaatttaactaccataaaacatccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattttcattaggttcatcgtcatcac |
44911787 |
T |
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| Q |
101 |
aacaacaccaacccctcttgtttcataccttcttcccatgg |
141 |
Q |
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| T |
44911788 |
aacaacaccaacccctcttgtttcataccttcttcccatgg |
44911828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 178 - 332
Target Start/End: Original strand, 44911826 - 44911978
Alignment:
| Q |
178 |
tggttgtttctttgatagtgggattgtgtaaagagtggcaacaaacaatcatatggtacattataaaaataaaactattatcccaacaaaatagtcttgc |
277 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
44911826 |
tggttgtttctttgatagtgggattgtgtaaagagcggcaacaaacaatcat--ggtacattataaaaataaaactattataccaacaaaatagccttgc |
44911923 |
T |
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| Q |
278 |
caaagaatttggaaactcaaatttgaaacaagaaaagaaattgcagcaaagggat |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44911924 |
caaagaatttggaaactcaaatttgaaacaagaaaagaaattgcagcaaagggat |
44911978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 3769143 - 3768993
Alignment:
| Q |
1 |
gaatttaactaccataaaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggttcatcgtcatcac |
100 |
Q |
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|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
3769143 |
gaatttaactaccatagaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattttcatttggttcatcgtcatcac |
3769044 |
T |
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| Q |
101 |
aacaacaccaacccctcttgtttcataccttcttcccatggattgtctcaa |
151 |
Q |
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| T |
3769043 |
agcaacaccaacccctcttgtttcataccttcttcccatggattgtgtcaa |
3768993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 3768615 - 3768575
Alignment:
| Q |
150 |
aacaagcatttgcaacaaaactctttgctggttgtttcttt |
190 |
Q |
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| T |
3768615 |
aacaagcatttgcaacaaaactctttgctggttgtttcttt |
3768575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 6353924 - 6354074
Alignment:
| Q |
1 |
gaatttaactaccataaaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggttcatcgtcatcac |
100 |
Q |
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|
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
6353924 |
gaattaaactaccatagaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattttcattcggttcatcgtcatcac |
6354023 |
T |
|
| Q |
101 |
aacaacaccaacccctcttgtttcataccttcttcccatggattgtctcaa |
151 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
6354024 |
aacaacaccaacccatcttgtttcataccttcttcccatggattgtgtcaa |
6354074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 150 - 325
Target Start/End: Original strand, 6354454 - 6354636
Alignment:
| Q |
150 |
aacaagcatttgcaacaaaactctttgctggttgtttcttt-gatagtggg-attgtgtaaagagtggcaacaaacaatcat-----atggtacattata |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| || || |||||| |
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| T |
6354454 |
aacaagcatttgcaacaaaactctttgctggttgtttcttttgatagtggggattgtgtaaagagcggcaacaaacaatcatggtacattataaattata |
6354553 |
T |
|
| Q |
243 |
aaaataaaactattatcccaacaaaatagtcttgccaaagaatttggaaactcaaatttgaaacaagaaaagaaattgcagca |
325 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6354554 |
aaaataaaattattatcccaacaaaatagtcttgccaaagaatttggaaagtcaaatttgaaacaagaaaagaaattgcagca |
6354636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 3928574 - 3928724
Alignment:
| Q |
1 |
gaatttaactaccataaaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggttcatcgtcatcac |
100 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
3928574 |
gaatttaactaccatagaaccttcaatttaccgttcatgtcattcatctatcttccatcttctcgtttctattaattttcattcggttcatcgtcatcac |
3928673 |
T |
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| Q |
101 |
aacaacaccaacccctcttgtttcataccttcttcccatggattgtctcaa |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
3928674 |
aacaacaccaacccctcttgtttcataccttcttcccatagattgtgtcaa |
3928724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 230 - 322
Target Start/End: Original strand, 3928981 - 3929073
Alignment:
| Q |
230 |
atggtacattataaaaataaaactattatcccaacaaaatagtcttgccaaagaatttggaaactcaaatttgaaacaagaaaagaaattgca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3928981 |
atggtacattataaaaataaaactattatcccaacaaaatagccttgccaaagaatttggaaagtcaaatttgaaacaagaaaagaaattgca |
3929073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 30372921 - 30372845
Alignment:
| Q |
1 |
gaatttaactaccataaaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaatt |
77 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30372921 |
gaatttaactaccatagatcctccaatttaccgttcatgtcattcatctatcttccatcttctcgtttctattaatt |
30372845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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