View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10229_high_9 (Length: 281)

Name: NF10229_high_9
Description: NF10229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10229_high_9
NF10229_high_9
[»] chr1 (17 HSPs)
chr1 (18-271)||(31100440-31100688)
chr1 (23-214)||(27064953-27065144)
chr1 (19-145)||(24075519-24075645)
chr1 (19-90)||(3850840-3850911)
chr1 (19-90)||(42137676-42137747)
chr1 (19-90)||(11051137-11051208)
chr1 (19-90)||(11829129-11829200)
chr1 (19-90)||(41512196-41512267)
chr1 (19-72)||(46033652-46033705)
chr1 (19-90)||(1762270-1762341)
chr1 (20-55)||(11051073-11051108)
chr1 (19-60)||(13509915-13509956)
chr1 (19-75)||(49430700-49430756)
chr1 (19-81)||(27416626-27416687)
chr1 (19-60)||(7385307-7385348)
chr1 (19-60)||(47655863-47655904)
chr1 (19-59)||(44740228-44740268)
[»] chr2 (12 HSPs)
chr2 (20-215)||(43694891-43695086)
chr2 (19-145)||(44002644-44002770)
chr2 (19-90)||(37551610-37551681)
chr2 (19-145)||(19860250-19860376)
chr2 (22-90)||(37640739-37640807)
chr2 (19-58)||(7473602-7473641)
chr2 (20-90)||(33598091-33598161)
chr2 (19-88)||(3739023-3739092)
chr2 (19-60)||(17480896-17480937)
chr2 (19-60)||(35458160-35458201)
chr2 (19-88)||(37996772-37996841)
chr2 (19-60)||(43342252-43342293)
[»] chr3 (20 HSPs)
chr3 (20-190)||(28883642-28883812)
chr3 (34-214)||(44328587-44328767)
chr3 (19-145)||(44610799-44610925)
chr3 (19-145)||(45489086-45489212)
chr3 (19-145)||(50392795-50392921)
chr3 (35-145)||(30809806-30809916)
chr3 (19-90)||(40237351-40237422)
chr3 (19-88)||(42074446-42074515)
chr3 (21-81)||(48181130-48181190)
chr3 (19-90)||(11263743-11263814)
chr3 (19-90)||(45150650-45150721)
chr3 (19-88)||(28182424-28182493)
chr3 (19-88)||(51229781-51229850)
chr3 (19-90)||(51407516-51407587)
chr3 (20-90)||(21985418-21985488)
chr3 (182-215)||(28883581-28883614)
chr3 (19-59)||(39251559-39251599)
chr3 (19-88)||(33025773-33025842)
chr3 (19-60)||(48254479-48254520)
chr3 (19-88)||(53687352-53687421)
[»] chr6 (5 HSPs)
chr6 (19-213)||(30134075-30134270)
chr6 (47-214)||(27824956-27825119)
chr6 (19-90)||(4146864-4146934)
chr6 (19-145)||(20838470-20838596)
chr6 (19-60)||(10683249-10683290)
[»] chr7 (18 HSPs)
chr7 (19-214)||(32450679-32450874)
chr7 (19-105)||(39857114-39857200)
chr7 (19-90)||(2000144-2000214)
chr7 (36-145)||(19544536-19544645)
chr7 (19-143)||(298635-298759)
chr7 (19-88)||(25970487-25970556)
chr7 (19-75)||(45202538-45202594)
chr7 (19-90)||(47085664-47085735)
chr7 (19-60)||(14999950-14999991)
chr7 (19-60)||(26827738-26827779)
chr7 (19-60)||(43664789-43664830)
chr7 (27-79)||(47238952-47239004)
chr7 (20-141)||(47158199-47158323)
chr7 (19-60)||(25472740-25472781)
chr7 (19-60)||(37371161-37371202)
chr7 (49-92)||(25191856-25191899)
chr7 (113-171)||(2000218-2000276)
chr7 (19-81)||(30825251-30825313)
[»] chr8 (15 HSPs)
chr8 (19-161)||(3590055-3590197)
chr8 (19-145)||(2025510-2025636)
chr8 (19-88)||(13015733-13015802)
chr8 (25-81)||(38023008-38023064)
chr8 (38-125)||(7636459-7636546)
chr8 (19-78)||(35802319-35802378)
chr8 (19-88)||(924155-924224)
chr8 (19-90)||(35164356-35164427)
chr8 (19-90)||(37684176-37684247)
chr8 (132-214)||(13015641-13015723)
chr8 (19-60)||(33165873-33165915)
chr8 (19-60)||(8416744-8416785)
chr8 (19-60)||(45276378-45276419)
chr8 (19-58)||(36821602-36821641)
chr8 (19-60)||(22936545-22936586)
[»] chr4 (18 HSPs)
chr4 (19-180)||(16203069-16203231)
chr4 (19-145)||(39732807-39732933)
chr4 (19-143)||(50523846-50523970)
chr4 (19-144)||(5937818-5937943)
chr4 (19-90)||(28911633-28911704)
chr4 (19-90)||(26457163-26457234)
chr4 (19-90)||(51677154-51677225)
chr4 (20-90)||(8503820-8503890)
chr4 (19-88)||(53404086-53404155)
chr4 (19-90)||(22606335-22606406)
chr4 (19-88)||(53663610-53663679)
chr4 (19-58)||(38767875-38767914)
chr4 (19-60)||(30418372-30418413)
chr4 (19-56)||(48407038-48407075)
chr4 (19-60)||(49723865-49723906)
chr4 (19-60)||(28963843-28963884)
chr4 (19-60)||(29386011-29386052)
chr4 (20-60)||(45105888-45105928)
[»] chr5 (13 HSPs)
chr5 (19-145)||(40979416-40979542)
chr5 (19-145)||(10900129-10900255)
chr5 (19-90)||(2526336-2526406)
chr5 (19-142)||(19375381-19375504)
chr5 (19-161)||(33387671-33387812)
chr5 (19-172)||(33082881-33083034)
chr5 (19-90)||(53642-53713)
chr5 (19-87)||(25256789-25256857)
chr5 (19-87)||(25320580-25320648)
chr5 (20-90)||(29367434-29367504)
chr5 (19-90)||(41040111-41040182)
chr5 (19-60)||(19356583-19356624)
chr5 (19-60)||(41742197-41742238)
[»] scaffold0184 (1 HSPs)
scaffold0184 (19-145)||(9669-9795)
[»] scaffold0702 (1 HSPs)
scaffold0702 (20-90)||(4540-4610)
[»] scaffold0662 (1 HSPs)
scaffold0662 (20-90)||(3488-3558)
[»] scaffold0097 (1 HSPs)
scaffold0097 (19-60)||(33037-33078)
[»] scaffold0068 (1 HSPs)
scaffold0068 (19-60)||(37777-37818)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 31100440 - 31100688
Alignment:
Q  18 agtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||||    
T  31100440 agtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattgtagcttcagccagaattacttttacataagagaat 31100539  T
Q  118 tgcttttgttaagttgaaccaaacatgtgaaaaattgcctttttcaattttgaggctctagaattgcttctggtcttggaataagctgaaccaaacagct 217  Q
    ||||||||| |||||||||     |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31100540 tgcttttgtaaagttgaac-----atgtgaaaaattgcctttttcaattttgagcctctagaattgcttctggtcttggaataagctgaaccaaacagct 31100634  T
Q  218 aattagatggattatctcaagacataattcagatatgactatgagtgttgatgt 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31100635 aattagatggattatctcaagacataattcagatatgactatgagtgttgatgt 31100688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 27065144 - 27064953
Alignment:
Q  23 taatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaattgctt 122  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| |   ||  |||||  |||||||||||||||    
T  27065144 taattaaaatataaaatttaatggagaattgattttagttaactcaaaaactaggaattgtagcttcagtcaaaatcgcttttgaagaagagaattgctt 27065045  T
Q  123 ttgttaagttgaaccaaacatgtgaaaaattgcctttttcaattttgaggctctagaattgcttctggtcttggaataagctgaaccaaaca 214  Q
    || | ||| |||||||||||||| ||||||||||||||| || | |   ||||||||||||||||| | ||   ||||||| ||||||||||    
T  27065044 ttataaagctgaaccaaacatgtcaaaaattgccttttttaaatctccagctctagaattgcttctagactaaaaataagccgaaccaaaca 27064953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 24075645 - 24075519
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| |||||| | || | |||||||||  ||| ||||||     
T  24075645 gtaataatcaaaatataaaatttattggagaattgattctagttaaatcaaaagttaggaattgtagctttatccagaattacttttgaagatgagaatc 24075546  T
Q  119 gcttttgttaagttgaaccaaacatgt 145  Q
    | ||||   ||||||||||||||||||    
T  24075545 gattttaaaaagttgaaccaaacatgt 24075519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 3850840 - 3850911
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||    
T  3850840 gtaataatcaaaatataaaatttattggagaattgattctagataactcaaaagctagaaattgtagcttca 3850911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 42137676 - 42137747
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||    
T  42137676 gtaataataaaaatataaaatttattggagaattgattctagttaactcaaaagctaggaattgtagattca 42137747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 11051137 - 11051208
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| ||| ||||    
T  11051137 gtaataatcaaaatataaaatttaatggagaattgattctagtttacccaaaagttaggaattgtagattca 11051208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 11829200 - 11829129
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||    
T  11829200 gtaataactaaaatataaaatttaatggagaattgattctagttaactcaaaagttaggaattataccttca 11829129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 41512267 - 41512196
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||||||||||||||||||||| ||||||| ||||| ||| ||||||||||| |||||||| ||||||||    
T  41512267 gtaataatcaaaatataaaatttattggagaaatgattatagctaactcaaaagttaggaattgtagcttca 41512196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 46033652 - 46033705
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaag 72  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||    
T  46033652 gtaataatcaaaatatacaatttattggagaattgattctaattaactcaaaag 46033705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 1762341 - 1762270
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||| ||| ||| ||||||||||||| |||||||||||||||| |||| ||||| |||||||| ||||||||    
T  1762341 gtaaaaattaaattataaaatttaatagagaattgattctagtaaacttaaaagttaggaattgtagcttca 1762270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 11051073 - 11051108
Alignment:
Q  20 taataatcaaaatataaaatttaatggagaattgat 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  11051073 taataatcaaaatataaaatttaatggagaattgat 11051108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 13509915 - 13509956
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  13509915 gtaataatcaaaatagaaaatttaatgtagaattgattctag 13509956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 49430756 - 49430700
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagcta 75  Q
    |||||||| ||||||||||||||| ||||||||||| |||| ||||  |||||||||    
T  49430756 gtaataataaaaatataaaatttattggagaattgaatctaattaatccaaaagcta 49430700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 27416687 - 27416626
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaatt 81  Q
    |||||||||||| ||||||| ||| ||||||||||||| |||||||| ||||| ||| |||||    
T  27416687 gtaataatcaaa-tataaaagttattggagaattgattatagttaacccaaaaactaagaatt 27416626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 7385348 - 7385307
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||| ||||||||||| | ||||||||||||    
T  7385348 gtaataatcaaaataaaaaatttaatgtaaaattgattctag 7385307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 47655863 - 47655904
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    |||||| |||||||| ||||||||||| ||||||||||||||    
T  47655863 gtaatagtcaaaatagaaaatttaatgtagaattgattctag 47655904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 44740268 - 44740228
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattcta 59  Q
    |||||||| |||||||||||||||| | |||||||||||||    
T  44740268 gtaataatgaaaatataaaatttaacgtagaattgattcta 44740228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 43695086 - 43694891
Alignment:
Q  20 taataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaattg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | |||  ||||||||||||||||||    
T  43695086 taataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagttaggaattgtagcttcagccagaattgtttttacagaagagaattg 43694987  T
Q  120 cttttgttaagttgaaccaaacatgtgaaaaattgcctttttcaattttgaggctctagaattgcttctggtcttggaataagctgaaccaaacag 215  Q
    ||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43694986 cttttgtaaagctgaaccaaacatgtgagaaattgcctttttcaattttgaggctctagaattgcttcgggtcttggaataagctgaaccaaacag 43694891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 44002770 - 44002644
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| || | ||| |||||| ||| |||||||    
T  44002770 gtaataatcaaaatataaaatttattggagaattgattctagctaactcaaaagctaggaattgtagcttcatccagaattgcttttagagatgagaatt 44002671  T
Q  119 gcttttgttaagttgaaccaaacatgt 145  Q
    | |||||  ||| ||||||||||||||    
T  44002670 gattttgagaagctgaaccaaacatgt 44002644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 37551681 - 37551610
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||||||| ||||||||    
T  37551681 gtaataatcaaaatacaaaatttattggagaattgattctagttaactcagaaactaggaattgtagcttca 37551610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 19860376 - 19860250
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    ||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| || ||||| || ||||| |    ||| |||||| ||| |||||||    
T  19860376 gtaataatcaaaatataaattttattggagaattgattatagttaactcaaaagttaagaattgtaacttcacctaaaattgcttttagagatgagaatt 19860277  T
Q  119 gcttttgttaagttgaaccaaacatgt 145  Q
    | |||||  ||||| ||||||||||||    
T  19860276 gattttgagaagttaaaccaaacatgt 19860250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 37640739 - 37640807
Alignment:
Q  22 ataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||||||||||||||||||||| ||||||||||||||  ||  ||||||||| || || ||||||||    
T  37640739 ataatcaaaatataaaatttaatgtagaattgattctaggaaagccaaaagctaagatttgtagcttca 37640807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 7473641 - 7473602
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattct 58  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  7473641 gtaataatcaaaatataaaatttaatgtagaattgattct 7473602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 33598091 - 33598161
Alignment:
Q  20 taataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||| |||| ||||||||| |||| |||||||||||||   |||||||||||||||| | |||||||||    
T  33598091 taataaccaaagtataaaattaaatgtagaattgattctaccaaactcaaaagctaggattcctagcttca 33598161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 3739023 - 3739092
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagctt 88  Q
    |||||||||||||||| |||||||||| |||||||||||||   || ||||||  |||||||| ||||||    
T  3739023 gtaataatcaaaatattaaatttaatgtagaattgattctaagaaagtcaaaaattaggaattgtagctt 3739092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 17480937 - 17480896
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  17480937 gtaataatcaaaatagaaaatttaatgtagaattgattctag 17480896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 35458160 - 35458201
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  35458160 gtaataatcaaaatagaaaatttaatgtagaattgattctag 35458201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 37996841 - 37996772
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagctt 88  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||  ||  |||||| |||||||| ||||||    
T  37996841 gtaataatcaagatataaaatttaatgtagaattgattcaaggaaagccaaaagttaggaattgtagctt 37996772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 43342252 - 43342293
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  43342252 gtaataatcaaaatagaaaatttaatgtagaattgattctag 43342293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 28883812 - 28883642
Alignment:
Q  20 taataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaattg 119  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| | | ||| |||||||| ||||||||||    
T  28883812 taataatcaaaatataaaatttaatggagaattgattctatttaactcaaaagctaagaattgtagcttcagtcagaattgcttttacaaaagagaattg 28883713  T
Q  120 cttttgttaagttgaaccaaacatgtgaaaaattgcctttttcaattttgaggctctagaattgcttctgg 190  Q
     |||||| ||| |||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||    
T  28883712 tttttgtaaagctgaaccaaacatgtaagaaattgcctttttcaattttcaggctctagaattgcttctgg 28883642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 214
Target Start/End: Complemental strand, 44328767 - 44328587
Alignment:
Q  34 taaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaattgcttttgttaagttg 133  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||| |||||  |||||||||||||| | || ||| ||    
T  44328767 taaaatataatggagaattgattctagttaactcaaaagctaggaattgtagcttcagccaaaattgcttttggagaagagaattgctctagtaaagctg 44328668  T
Q  134 aaccaaacatgtgaaaaattgcctttttcaattttgaggctctagaattgcttctggtcttggaataagctgaaccaaaca 214  Q
    |||||||||||| |||||||| ||||||||||| | | ||| ||||||||||||| | ||   |||||| |||||||||||    
T  44328667 aaccaaacatgtcaaaaattgtctttttcaattctcaagctttagaattgcttctagactaaaaataagttgaaccaaaca 44328587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 44610799 - 44610925
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||| |||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||| || | ||| |||||  ||| |||||||    
T  44610799 gtaataattaaaatataaaatttaatggagaattgattctaataaactcaaaagctagaaattgtagcttcaaccagaattgcttttggagatgagaatt 44610898  T
Q  119 gcttttgttaagttgaaccaaacatgt 145  Q
    | |||||| ||| ||||||||||||||    
T  44610899 gattttgtgaagctgaaccaaacatgt 44610925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 45489086 - 45489212
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||||||| |||| |||||||| |||||||| |  | ||| |||||| ||| |||||||    
T  45489086 gtaataatcaaaatataaattttattggaaaattgattctagttaactccaaagttaggaattgtagcttcacctagaattgcttttagagatgagaatt 45489185  T
Q  119 gcttttgttaagttgaaccaaacatgt 145  Q
    | |||||  ||||| ||||||||||||    
T  45489186 gattttgagaagttaaaccaaacatgt 45489212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 50392795 - 50392921
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||| ||||||||||||||| | ||||||| ||||||| ||||| |||||||||||||| ||| |||| || | |||||||||  ||| |||||||    
T  50392795 gtaataataaaaatataaaatttattagagaatttattctagctaacttaaaagctaggaattgtagtttcatccagaattacttttggagatgagaatt 50392894  T
Q  119 gcttttgttaagttgaaccaaacatgt 145  Q
    | |||||  ||||||||||||||||||    
T  50392895 gattttgagaagttgaaccaaacatgt 50392921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 30809916 - 30809806
Alignment:
Q  35 aaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaattgcttttgttaagttga 134  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| || | ||| |||||  ||| |||| ||| |||||  ||| |||    
T  30809916 aaaatttattggagaattgattctagctaactcaaaagctaggaattgtagcttcatccagaattgcttttggagatgagagttgattttgagaagctga 30809817  T
Q  135 accaaacatgt 145  Q
    |||||||||||    
T  30809816 accaaacatgt 30809806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 40237422 - 40237351
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | ||||| |||||||| || |||||    
T  40237422 gtaataatcaaaatataaaatttgatggagaattgattctagttaatttaaaagttaggaattgtaacttca 40237351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 42074515 - 42074446
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagctt 88  Q
    |||||||||||||||| |||||||||| ||||||||||| ||  || |||||||||||||||| ||||||    
T  42074515 gtaataatcaaaatattaaatttaatgtagaattgattcgagcaaagtcaaaagctaggaattgtagctt 42074446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 48181190 - 48181130
Alignment:
Q  21 aataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaatt 81  Q
    ||||||||||||||||||||||||| ||||||||||||||  ||  |||||||||||||||    
T  48181190 aataatcaaaatataaaatttaatgtagaattgattctaggaaagccaaaagctaggaatt 48181130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 11263814 - 11263743
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    ||||||||||||||||||||||||||  ||||||||||||||  ||  |||||||||||| || ||||||||    
T  11263814 gtaataatcaaaatataaaatttaatctagaattgattctaggaaagccaaaagctaggatttgtagcttca 11263743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 45150721 - 45150650
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||| |||||||||||||||||||||| ||||||||||||||  ||  |||||||||||| || ||||||||    
T  45150721 gtaacaatcaaaatataaaatttaatgtagaattgattctaggaaaaccaaaagctaggatttgtagcttca 45150650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 28182493 - 28182424
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagctt 88  Q
    ||||||||||||||||||||||||||| |||||||||| |||  ||  |||||| |||||||| ||||||    
T  28182493 gtaataatcaaaatataaaatttaatgtagaattgattataggaaagccaaaagttaggaattttagctt 28182424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 51229850 - 51229781
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagctt 88  Q
    |||||||||||||||| |||||||||| ||||||||||||||  ||  |||||| |||||||| ||||||    
T  51229850 gtaataatcaaaatattaaatttaatgtagaattgattctaggaaagccaaaagttaggaattgtagctt 51229781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 51407587 - 51407516
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||||| ||||||||| ||||| ||||||||||||| ||||||||  |||| |||| |||| ||||||||    
T  51407587 gtaataattaaaatataatatttattggagaattgattttagttaaccaaaaaactagaaattgtagcttca 51407516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 21985488 - 21985418
Alignment:
Q  20 taataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||| |||| ||||||||| |||| |||||||||||||   |||||||||| ||||| |||||||||||    
T  21985488 taataaccaaagtataaaattaaatgtagaattgattctaccaaactcaaaagttaggatttctagcttca 21985418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 28883614 - 28883581
Alignment:
Q  182 tgcttctggtcttggaataagctgaaccaaacag 215  Q
    ||||||||||||||||||||||||||||||||||    
T  28883614 tgcttctggtcttggaataagctgaaccaaacag 28883581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 39251599 - 39251559
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattcta 59  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  39251599 gtaataatcaaaatagaaaatttaatgtagaattgattcta 39251559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 33025773 - 33025842
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagctt 88  Q
    |||||||| ||||||| |||||| ||| |||||||||| |||  ||  ||||||||||||||| ||||||    
T  33025773 gtaataattaaaatattaaattttatgtagaattgattataggaaagccaaaagctaggaattgtagctt 33025842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 48254479 - 48254520
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||| ||||||||||  ||||||||||||||    
T  48254479 gtaataatcaaaatagaaaatttaatatagaattgattctag 48254520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 53687352 - 53687421
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagctt 88  Q
    |||||||||||||||| ||||||| || |||||||||| |||  ||  ||||| ||||||||| ||||||    
T  53687352 gtaataatcaaaatattaaatttagtgtagaattgattttagaaaagccaaaacctaggaattgtagctt 53687421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 30134270 - 30134075
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| || | ||| |||||  |||||||||||    
T  30134270 gtaataattaaaatataaaatttaatggagaattgattctggttaactcaaaagctagaaattgtagcttcaaccagaattgcttttggagaagagaatt 30134171  T
Q  119 gcttttgttaagttgaaccaaacatgtgaaaaattgc-ctttttcaattttgaggctctagaattgcttctggtcttggaataagctgaaccaaac 213  Q
    |||||||| ||| |||||||||||||||| |||||||  |||||||||||||||||| ||||| || |||||| || |||| ||||||||||||||    
T  30134170 gcttttgtaaagctgaaccaaacatgtgacaaattgctttttttcaattttgaggctgtagaagtgattctggactaggaaaaagctgaaccaaac 30134075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 214
Target Start/End: Complemental strand, 27825119 - 27824956
Alignment:
Q  47 agaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaattgcttttgttaagttgaaccaaacatgtg 146  Q
    |||||||||||||||||||| ||||| |||||||| |||||||| ||   ||| |||||  |||||||||||||||||    || ||||||||||||||     
T  27825119 agaattgattctagttaactgaaaagttaggaattgtagcttcaaccataattgcttttggagaagagaattgctttt----agctgaaccaaacatgtc 27825024  T
Q  147 aaaaattgcctttttcaattttgaggctctagaattgcttctggtcttggaataagctgaaccaaaca 214  Q
    || ||||||||||||||||| | | ||||||||||||||||||| ||   ||||||||||||||||||    
T  27825023 aacaattgcctttttcaattctcaagctctagaattgcttctggactaataataagctgaaccaaaca 27824956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 4146934 - 4146864
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4146934 gtaataatcaaaatataaaatt-aatggagaattgattctagttaactcaaaagctaggaattgtagcttca 4146864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 20838470 - 20838596
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||||||||||||| ||||| ||||||||||||| |||| |||||||||| ||||| || |||||||| || | ||| |||||  ||| |||||||    
T  20838470 gtaataatcaaaatataagatttattggagaattgattatagtaaactcaaaagttaggatttgtagcttcaaccagaattgcttttggagatgagaatt 20838569  T
Q  119 gcttttgttaagttgaaccaaacatgt 145  Q
    | |||||  ||| ||||||||||||||    
T  20838570 gattttgagaagctgaaccaaacatgt 20838596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 10683290 - 10683249
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  10683290 gtaataatcaaaatagaaaatttaatgtagaattgattctag 10683249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 32450874 - 32450679
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||||| ||   ||| |||||  |||||||||||    
T  32450874 gtaataatcaaaatataaaatttattggagaattgattctagttaactcaaaagttagaaattgtagcttcaaccaaaattgcttttggagaagagaatt 32450775  T
Q  119 gcttttgttaagttgaaccaaacatgtgaaaaattgcctttttcaattttgaggctctagaattgcttctggtcttggaataagctgaaccaaaca 214  Q
    |||||||| |||||||||||||||| | | ||||||| ||||| |||| ||| |||||| |||||||||||| ||  ||| |||||||||||||||    
T  32450774 gcttttgtaaagttgaaccaaacatataagaaattgcttttttaaattctgaagctctaaaattgcttctggactaagaagaagctgaaccaaaca 32450679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 39857200 - 39857114
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattactttt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || | |||||||||    
T  39857200 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctatgaattgtagcttcatccagaattactttt 39857114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 2000144 - 2000214
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  2000144 gtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattgtagcttca 2000214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 19544645 - 19544536
Alignment:
Q  36 aaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaattgcttttgttaagttgaa 135  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| ||   |||||||||  ||| |||||||| |||||  ||| ||||    
T  19544645 aaatttaatggagaattgattctagtaaactcaaaagctatgaattgtagcttcaaccataattacttttggagatgagaattgattttgagaagctgaa 19544546  T
Q  136 ccaaacatgt 145  Q
    ||||||||||    
T  19544545 ccaaacatgt 19544536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 298635 - 298759
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||||||  |   ||| |||||| | | |||||||    
T  298635 gtaataattaaaatataaaatttaatggagaattgattctagtaaacttaaaagctaagaattgtagcttcaatcaaaattgcttttagaaatgagaatt 298734  T
Q  119 gcttttgttaagttgaaccaaacat 143  Q
    | |||||  ||| ||||||||||||    
T  298735 gattttgagaagctgaaccaaacat 298759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 25970556 - 25970487
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagctt 88  Q
    ||||||||||||||||||||||||||| |||||||||||||   ||  ||||||||||||||| ||||||    
T  25970556 gtaataatcaaaatataaaatttaatgtagaattgattctaagaaagccaaaagctaggaattgtagctt 25970487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 45202594 - 45202538
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagcta 75  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||  ||||||||    
T  45202594 gtaataattaaaatataaaatttattggagaattgattctagttaacctaaaagcta 45202538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 47085664 - 47085735
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||||| |||||||||| || ||||||||||| |||||||| |||||||||| |||||||| || |||||    
T  47085664 gtaataattaaaatataaatttcaatggagaattaattctagtaaactcaaaagttaggaattgtaacttca 47085735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 14999991 - 14999950
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  14999991 gtaataatcaaaatataaaatttaatgtagaattgattctag 14999950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 26827738 - 26827779
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  26827738 gtaataatcaaaatataaaatttaatgtagaattgattctag 26827779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 43664789 - 43664830
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  43664789 gtaataatcaaaatataaaatttaatgtagaattgattctag 43664830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 47238952 - 47239004
Alignment:
Q  27 caaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaa 79  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||| ||||||    
T  47238952 caaaatataaaatttaatgcagaattgattctaactaactcaaaagttaggaa 47239004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 47158199 - 47158323
Alignment:
Q  20 taataatcaaaatataaaatttaatggagaattgatt---ctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaa 116  Q
    ||||||| |||||||||||||||||||||||||||||    || |||| ||||||| || ||||| |||||||| ||   ||| |||||  ||| |||||    
T  47158199 taataataaaaatataaaatttaatggagaattgattataatatttaattcaaaagttatgaattgtagcttcacccaaaattgcttttggagatgagaa 47158298  T
Q  117 ttgcttttgttaagttgaaccaaac 141  Q
    ||| |||||  ||||| ||||||||    
T  47158299 ttgattttgagaagttaaaccaaac 47158323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 25472740 - 25472781
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  25472740 gtaataatcaaaatagaaaatttaatgtagaattgattctag 25472781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 37371202 - 37371161
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  37371202 gtaataatcaaaatagaaaatttaatgtagaattgattctag 37371161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 25191856 - 25191899
Alignment:
Q  49 aattgattctagttaactcaaaagctaggaattctagcttcagc 92  Q
    |||||||||||||||||||||||||||| |||| || |||||||    
T  25191856 aattgattctagttaactcaaaagctagaaattataacttcagc 25191899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 2000218 - 2000276
Alignment:
Q  113 agaattgcttttgttaagttgaaccaaacatgtgaaaaattgcctttttcaattttgag 171  Q
    ||||||| |||||| |||||||||||||| ||| | ||||||| |||||||||| ||||    
T  2000218 agaattgtttttgtaaagttgaaccaaacctgtaagaaattgcttttttcaattatgag 2000276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 30825313 - 30825251
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaatt 81  Q
    |||||||| ||||||| |||||||||| |||||||||||| |  ||  |||||||||||||||    
T  30825313 gtaataattaaaatattaaatttaatgtagaattgattcttggaaagccaaaagctaggaatt 30825251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 3590197 - 3590055
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || | |||  ||||  |||||||||||    
T  3590197 gtaataattaaaatataaaatttaatggagaattgattctagttaactcaaaagttaggaattgtagcttcaaccagaattgtttttggagaagagaatt 3590098  T
Q  119 gcttttgttaagttgaaccaaacatgtgaaaaattgccttttt 161  Q
    |||| ||| ||| |||||||||||||||| ||||||| |||||    
T  3590097 gcttctgtaaagctgaaccaaacatgtgacaaattgctttttt 3590055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 2025636 - 2025510
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    ||||||||||||||||||||| || ||||||||||||||||| |||||||||| ||||||||| |||||||| ||   ||| |||||  ||| |||||||    
T  2025636 gtaataatcaaaatataaaatatattggagaattgattctagctaactcaaaaactaggaattgtagcttcatccaaaattgcttttggagatgagaatt 2025537  T
Q  119 gcttttgttaagttgaaccaaacatgt 145  Q
    | |||||  ||| ||||||||||||||    
T  2025536 gattttgagaagctgaaccaaacatgt 2025510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 13015802 - 13015733
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagctt 88  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||||    
T  13015802 gtaataatcaaaatataaaatttaatgtagaattgattctcgttaactcaaaagttaggaattgtagctt 13015733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 38023064 - 38023008
Alignment:
Q  25 atcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaatt 81  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||    
T  38023064 atcaaaatataagatttaatggagaattgattctagttaacttaaaaggtaagaatt 38023008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 7636546 - 7636459
Alignment:
Q  38 atttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaattgcttttg 125  Q
    ||||||||||||||||||| || ||||||||||| ||||||||| |||||||| |  | ||| |||||| ||| |||||||| |||||    
T  7636546 atttaatggagaattgattttacttaactcaaaatctaggaattatagcttcaacaagaattgcttttagagatgagaattgattttg 7636459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 35802319 - 35802378
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctagga 78  Q
    ||||||||||||||||||||||||||| ||||||||||||||  ||  ||||||||||||    
T  35802319 gtaataatcaaaatataaaatttaatgtagaattgattctaggaaagccaaaagctagga 35802378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 924224 - 924155
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagctt 88  Q
    ||||||||||||||||||||| || ||  |||||||||||||||||  |||||| |||||||| ||||||    
T  924224 gtaataatcaaaatataaaatatattgacgaattgattctagttaaaccaaaagttaggaattgtagctt 924155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 35164356 - 35164427
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||||| ||||||| |||||||||| ||||||||||| ||  || |||||| ||||||||| ||||||||    
T  35164356 gtaataattaaaatattaaatttaatgtagaattgattcgaggaaagtcaaaaactaggaattgtagcttca 35164427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 37684176 - 37684247
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    ||||||| ||||||| ||||||||||  || |||||||||||| |||||||||| |||||||| || |||||    
T  37684176 gtaataaccaaaatacaaaatttaatccagcattgattctagtcaactcaaaagttaggaattgtatcttca 37684247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 13015723 - 13015641
Alignment:
Q  132 tgaaccaaacatgtgaaaaattgcctttttcaattttgaggctctagaattgcttctggtcttggaataagctgaaccaaaca 214  Q
    |||||||||||||| | ||||||| |||||||||| ||||||| ||||| ||||||||| ||   || ||| |||||||||||    
T  13015723 tgaaccaaacatgtaagaaattgcttttttcaattctgaggctgtagaagtgcttctggactaaaaagaagttgaaccaaaca 13015641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 33165915 - 33165873
Alignment:
Q  19 gtaataatcaaaa-tataaaatttaatggagaattgattctag 60  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  33165915 gtaataatcaaaaatataaaatttaatggagaattgattctag 33165873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 8416785 - 8416744
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  8416785 gtaataatcaaaatagaaaatttaatgtagaattgattctag 8416744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 45276378 - 45276419
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  45276378 gtaataatcaaaatagaaaatttaatgtagaattgattctag 45276419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 36821602 - 36821641
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattct 58  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  36821602 gtaataatcaaaatataaaatttaatgtaaaattgattct 36821641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 22936545 - 22936586
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||| ||||| ||||||||||| ||||||||||||||    
T  22936545 gtaataatcgaaatagaaaatttaatgtagaattgattctag 22936586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 16203069 - 16203231
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||   ||| |||||  |||||||||||    
T  16203069 gtaataattaaaatataaaatttaatggagaattgattctagtcaactcaaaagctaggaattgtagcttcaaccaaaattgcttttggagaagagaatt 16203168  T
Q  119 gcttttgttaagttgaaccaaacatgtgaaaaattg-cctttttcaattttgaggctctagaa 180  Q
    || | ||| ||| |||||||||||||||| ||||||   |||||||||| ||||||| |||||    
T  16203169 gcatctgtaaagctgaaccaaacatgtgacaaattgttttttttcaattatgaggctgtagaa 16203231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 39732933 - 39732807
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| || | ||| |||||  ||| |||||||    
T  39732933 gtaataatcaaaatataaaatttattggagaattgattctagctaactcaaaagctaggaattgtagcttcatccagaattgcttttggagatgagaatt 39732834  T
Q  119 gcttttgttaagttgaaccaaacatgt 145  Q
    | |||||  ||| ||||||||||||||    
T  39732833 gattttgagaagctgaaccaaacatgt 39732807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 50523846 - 50523970
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| || | ||| |||||  ||| |||||||    
T  50523846 gtaataatcaaaatattaaatttattggagaattgattctagctaactcaaaagctaggaattgtagcttcatccagaattgcttttggagatgagaatt 50523945  T
Q  119 gcttttgttaagttgaaccaaacat 143  Q
    | |||||  ||||||||||||||||    
T  50523946 gattttgagaagttgaaccaaacat 50523970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 5937818 - 5937943
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||   ||| |||||  ||| |||||||    
T  5937818 gtaataatcaaaatataaaatttattggagaattgattctagctaactcaaaagctaggaattgtagcttcatccataattgcttttggagatgagaatt 5937917  T
Q  119 gcttttgttaagttgaaccaaacatg 144  Q
    | |||||  ||| |||||||||||||    
T  5937918 gattttgagaagctgaaccaaacatg 5937943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 28911704 - 28911633
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||    
T  28911704 gtaataatcaaaatataaaatttaatggagaattgattttagttaactcaaaagttaggaattgtagcttca 28911633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 26457234 - 26457163
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| |||| ||||||||    
T  26457234 gtaataattaaaatataaaatttattggagaattgattctagttaacccaaaagctagaaattgtagcttca 26457163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 51677225 - 51677154
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||||| |||||||||||||||||||| ||||||||||||| |||||||||| |||||||| ||||||||    
T  51677225 gtaataattaaaatataaaatttaatggaaaattgattctagtaaactcaaaagttaggaattgtagcttca 51677154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 8503890 - 8503820
Alignment:
Q  20 taataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||| |||||| |||||||| ||||||||    
T  8503890 taataatcaaaatataaaatttattggaaaattgattctagttaacacaaaagttaggaattgtagcttca 8503820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 53404086 - 53404155
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagctt 88  Q
    ||||||||||||||||||||||||||| | ||||||||||||  ||  ||||||||||||||| ||||||    
T  53404086 gtaataatcaaaatataaaatttaatgtaaaattgattctaggaaaaccaaaagctaggaattgtagctt 53404155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 22606335 - 22606406
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    ||||||||||||||||||||||||||  |||||||||||| |  || ||||||||||||| || ||||||||    
T  22606335 gtaataatcaaaatataaaatttaatatagaattgattcttggaaagtcaaaagctaggatttgtagcttca 22606406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 53663610 - 53663679
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagctt 88  Q
    ||||||||||||||||||||||||||| |||||||||| |||  ||  |||||| |||||||| ||||||    
T  53663610 gtaataatcaaaatataaaatttaatgtagaattgattataggaaagccaaaagttaggaattgtagctt 53663679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 38767914 - 38767875
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattct 58  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  38767914 gtaataatcaaaatataaaatttaatgtagaattgattct 38767875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 30418372 - 30418413
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  30418372 gtaataatcaaaatagaaaatttaatgtagaattgattctag 30418413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 48407075 - 48407038
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgatt 56  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  48407075 gtaataatcaaaatataaaatttaatgtagaattgatt 48407038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 49723906 - 49723865
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  49723906 gtaataatcaaaatataaaatttaatatagaattgattctag 49723865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 28963843 - 28963884
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||| ||||||||||  ||||||||||||||    
T  28963843 gtaataatcaaaatagaaaatttaatatagaattgattctag 28963884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 29386011 - 29386052
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||| |||||||| || ||||||||||||||    
T  29386011 gtaataatcaaaataaaaaatttattgtagaattgattctag 29386052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 45105928 - 45105888
Alignment:
Q  20 taataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||| ||||| |||| ||||||||||||||    
T  45105928 taataatcaaaatattaaattgaatgtagaattgattctag 45105888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 40979542 - 40979416
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||| || | ||| |||||  ||| |||||||    
T  40979542 gtaataatcaaaatataaaatttattggagaattgattatagctaactcaaaagctaggaattgtagcttcatccagaattgcttttggagatgagaatt 40979443  T
Q  119 gcttttgttaagttgaaccaaacatgt 145  Q
    | ||||| |||| ||||||||||||||    
T  40979442 gattttgataagctgaaccaaacatgt 40979416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 10900255 - 10900129
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| || | ||| |||||  ||| |||||||    
T  10900255 gtaataatcaaaatataaaatttattggagaattgattctagctaactcaaaagttaggaattgtagcttcatccagaattgcttttggagatgagaatt 10900156  T
Q  119 gcttttgttaagttgaaccaaacatgt 145  Q
    | |||||  ||| ||||||||||||||    
T  10900155 gattttgagaagctgaaccaaacatgt 10900129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 2526406 - 2526336
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2526406 gtaataatcaaaatataaaatt-aatggagaattgattctagttaactcaaaagctaggaattgtagcttca 2526336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 19375381 - 19375504
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||||||| |||||||| || | ||| |||||  ||| |||||||    
T  19375381 gtaataatcaaaatataaaatttattagagaattgattctagctaactcaaaagttaggaattgtagcttcatccagaattgcttttggagatgagaatt 19375480  T
Q  119 gcttttgttaagttgaaccaaaca 142  Q
    | |||||  ||| | |||||||||    
T  19375481 gattttgagaagcttaaccaaaca 19375504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 33387671 - 33387812
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||| ||||||||||||||||||||||||||||| | || |||||||||| |||||||| |||||||| || | |||  ||||  |||||| ||||    
T  33387671 gtaataattaaaatataaaatttaatggagaattgattatggtcaactcaaaagttaggaattgtagcttcaaccagaattgtttttggagaagaaaatt 33387770  T
Q  119 gcttttgttaagttgaaccaaacatgtgaaaaattgccttttt 161  Q
    |||| | | ||| ||||||||||||| || ||||||| |||||    
T  33387771 gcttctataaag-tgaaccaaacatgcgataaattgctttttt 33387812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 33082881 - 33083034
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||| |||||||||||||  |||||||||||||||||||||||||||||| | |||||  |||||| | || | |||| ||||  | |||||||||    
T  33082881 gtaataattaaaatataaaattagatggagaattgattctagttaactcaaaagtttggaatggtagctttaaccagaattaattttggaaaagagaatt 33082980  T
Q  119 gcttttgttaagttgaaccaaacatgtgaaaaattgcctttttcaattttgagg 172  Q
    | || ||| ||| ||||| || ||||||| | ||||| ||||| |||| |||||    
T  33082981 gattctgtaaagctgaactaagcatgtgacagattgctttttttaattctgagg 33083034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 53642 - 53713
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||||| ||||||||||||||| |||| |||||||| |||||||| ||||||||||||||| ||||||||    
T  53642 gtaataattaaaatataaaatttattggataattgattatagttaacccaaaagctaggaattgtagcttca 53713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 25256789 - 25256857
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagct 87  Q
    |||||||| |||||||||||||| ||||| ||||||||||| | |||||||||| || ||||| |||||    
T  25256789 gtaataattaaaatataaaatttcatggataattgattctattaaactcaaaagttatgaattatagct 25256857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 25320580 - 25320648
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagct 87  Q
    |||||||| |||||||||||||| ||||| ||||||||||| | |||||||||| || ||||| |||||    
T  25320580 gtaataattaaaatataaaatttcatggataattgattctattaaactcaaaagttatgaattatagct 25320648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 29367434 - 29367504
Alignment:
Q  20 taataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||| |||| ||||||||| |||| |||||||||||||   |||||||||| ||||| |||||||||||    
T  29367434 taataaccaaagtataaaattaaatgtagaattgattctaccaaactcaaaagttaggatttctagcttca 29367504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 41040111 - 41040182
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||||||||||| |||||||||| | |||||||||||| |  ||  |||||||||||| || ||||||||    
T  41040111 gtaataatcaaaatttaaaatttaacgtagaattgattcttgaaaagccaaaagctaggatttgtagcttca 41040182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 19356624 - 19356583
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    |||||||| |||||| ||||||||||| ||||||||||||||    
T  19356624 gtaataataaaaatagaaaatttaatgtagaattgattctag 19356583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 41742197 - 41742238
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    |||| |||||||||| ||||||||||| ||||||||||||||    
T  41742197 gtaacaatcaaaatagaaaatttaatgtagaattgattctag 41742238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 9669 - 9795
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttcagccggtattacttttacagaagagaatt 118  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| || | |||  ||||  ||| |||||||    
T  9669 gtaataatcaaaatataaaatttattggagaattgattctagctaactcaaaagttaggaattgtagcttcatccagaattgtttttgaagatgagaatt 9768  T
Q  119 gcttttgttaagttgaaccaaacatgt 145  Q
    | |||||  ||| ||||||||||||||    
T  9769 gattttgagaagctgaaccaaacatgt 9795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 4540 - 4610
Alignment:
Q  20 taataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||| ||||||| ||||||||||| | |||||||| |||||||||||||||||||||||| ||||||||    
T  4540 taataaccaaaatagaaaatttaatgcataattgattgtagttaactcaaaagctaggaattgtagcttca 4610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 3558 - 3488
Alignment:
Q  20 taataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattctagcttca 90  Q
    |||||| ||||||| ||||||||||| | |||||||| |||||||||||||||||||||||| ||||||||    
T  3558 taataaccaaaatagaaaatttaatgcataattgattgtagttaactcaaaagctaggaattgtagcttca 3488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 33037 - 33078
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  33037 gtaataatcaaaatataaaatttaatttagaattgattctag 33078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 37818 - 37777
Alignment:
Q  19 gtaataatcaaaatataaaatttaatggagaattgattctag 60  Q
    ||||||||||||||| ||||||||||  ||||||||||||||    
T  37818 gtaataatcaaaatagaaaatttaatttagaattgattctag 37777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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