View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10229_low_1 (Length: 722)
Name: NF10229_low_1
Description: NF10229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10229_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 661; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 16 - 707
Target Start/End: Original strand, 28706873 - 28707567
Alignment:
| Q |
16 |
agacacaccacaacggggaacaattaactccttttttaaatagagactctcttaccggcaaccttttatgtagaatacaccacataagttgcatttgacg |
115 |
Q |
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| T |
28706873 |
agacacaccacaacggggaacaattaactccttttttaaatagagactctcttaccggcaaccttttatgtagaatacaccacataagttgcatttgaca |
28706972 |
T |
|
| Q |
116 |
cataatagttttaagcttccatagtttactccattcattactctcttgaggtatgacagattgattggagttgagcatctcatttcttcgtttttggaat |
215 |
Q |
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| T |
28706973 |
cataatagttttaagcttccatagtttactccattcattactctcttgaggtatgacagattgattggagttgagcatctcatttcttcgtttttggaat |
28707072 |
T |
|
| Q |
216 |
ttgtaagcagacttaacagaaaattcacattcgttattctctccccatatgaagcgatcttgcggattatttagggaaagagggatttaaaggatttgtt |
315 |
Q |
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| T |
28707073 |
ttgtaagcagacttaacagaaaattcacattcgttattctctccccatatgaagcgatcttgcggattatttagggaaagagggatttaaaggatttgtt |
28707172 |
T |
|
| Q |
316 |
gagccttaaaagcaaggaaggtagcattaatcaattgagaattccattctttc---tgatctggatgtattaggtctgccacatttcacagaacataatt |
412 |
Q |
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| T |
28707173 |
gagccttaaaagcaaggaaggtagcattaatcaattgagaattccattctttctgatgatctggatgtattaggtctgccacatttcacagaacataatt |
28707272 |
T |
|
| Q |
413 |
tggaggttaaggggaccaaattctatgaccttgttgatatggtaaccaattatcaccccaaattttaatacttttaccgtcaccaaccaaagaccagcat |
512 |
Q |
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| T |
28707273 |
tggaggttaaggggaccaaattctatgaccttgttgatatggtaaccaattatcaccccaaattttaatacttttaccgtcaccaaccaaagaccagcat |
28707372 |
T |
|
| Q |
513 |
gatcgataacctctattcgagcttgtagaacactcctccaagtgtaacttggattatatccatgagttgcatctaggaagatcgttcttggaaattattg |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28707373 |
gatcgataacctctattcgagcttgtagaacactcctccaagtgtaacttggattatatccatgagttgcatttaggaagatcgttcttggaaattattg |
28707472 |
T |
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| Q |
613 |
ccttttcaagcagcaaccgagcaaaaacttccttcattccgaataatatgccattttttctttgctaacatagctaagttaaactccttcatggt |
707 |
Q |
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| T |
28707473 |
ccttttcaagcaactaccgagcaaaaactttcttcattccgaataatatgccattttttctttgctaacatagctaagttaaactccttcatggt |
28707567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 350 - 707
Target Start/End: Original strand, 24704233 - 24704592
Alignment:
| Q |
350 |
ttgagaattccattctttctgatctggatgtattaggtctgccacatttcacagaacataatttggaggttaaggggaccaaattctatgaccttgttga |
449 |
Q |
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|||||||||| |||||||| |||||| ||||||||| | |||||| ||| | |||| | |||||||||||| ||| |||||||||||| ||||||| ||| |
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| T |
24704233 |
ttgagaattctattctttccgatctgaatgtattagtt-tgccacttttgaaagaatacaatttggaggttgaggagaccaaattctacgaccttgctga |
24704331 |
T |
|
| Q |
450 |
tatggtaaccaattatcaccccaaattttaatacttttaccgtcaccaac----caaagaccagcatgatcgataacctctattcgagcttgtagaacac |
545 |
Q |
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| T |
24704332 |
tatggtaaccagttatcaccccaaattttagtacttttaccatcaccaactctccaaagaccaacatgatcgataacctccattcgatcttgaagaatac |
24704431 |
T |
|
| Q |
546 |
tcctccaagtgtaacttggattatatccatgagttgcatctaggaagatcgttcttggaaattattgccttttcaagcagcaaccgagcaaaaacttcct |
645 |
Q |
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| T |
24704432 |
tcctccaagtgtaacttggattatatccaagagttgcattgaggaagttggttcttggaaagtatcgccttttcaagcaactaccga--acaaactttct |
24704529 |
T |
|
| Q |
646 |
tcattccgaataatatgccattttttctttgctaacatagctaagtt-aaactccttcatggt |
707 |
Q |
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|||||| |||||||| ||||| || | |||| |||||||||||||| ||||||||||||||| |
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| T |
24704530 |
tcattctgaataatacgccatccttgccttgccaacatagctaagttaaaactccttcatggt |
24704592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 1171541 - 1171499
Alignment:
| Q |
95 |
ccacataagttgcatttgacgcataatagttttaagcttccat |
137 |
Q |
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| T |
1171541 |
ccacataagttgcatatgacgcagaattgttttaagcttccat |
1171499 |
T |
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