View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10229_low_15 (Length: 242)
Name: NF10229_low_15
Description: NF10229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10229_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 2699930 - 2699707
Alignment:
| Q |
18 |
aattgtttacagaatggttcttgtactgcttatgcagaagttattggaattggttgtatggtttggtatggagatttggttgatattctacactttcaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2699930 |
aattgtttacagaatggttcttgtactgcttatgcagaagttattggaattggttgtatggtttggtatggagatttggttgatattctacactttcaac |
2699831 |
T |
|
| Q |
118 |
atggagaaggaaacgctctgcacattcgtctcgcttattctgatttaggtaaagtactaagaataccttgagttttgtttcatgtatggttctttggttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2699830 |
atggagaaggaaacgctctgcacattcgtctcgcttattctgatttaggtaaagtactaagaataccttgagttttgtttcatgtatggttctttggttt |
2699731 |
T |
|
| Q |
218 |
tgatttcatttatcagtactaatt |
241 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
2699730 |
tgatttcatttatcagtaataatt |
2699707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 2692231 - 2692080
Alignment:
| Q |
18 |
aattgtttacagaatggttcttgtactgcttatgcagaagttattggaattggttgtatggtttggtatggagatttggttgatattctacactttcaac |
117 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||| ||| ||| ||| |
|
|
| T |
2692231 |
aattgtttggagaatacttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatggagatttggttgatgttcaacagtttgaac |
2692132 |
T |
|
| Q |
118 |
atggagaaggaaacgctctgcacattcgtctcgcttattctgatttaggtaa |
169 |
Q |
| |
|
||| || ||||| | |||| |||||||| ||| |||||||||||||||| |
|
|
| T |
2692131 |
gtggtgatggaaatacattgcatattcgtcttgctcattctgatttaggtaa |
2692080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 14521305 - 14521211
Alignment:
| Q |
18 |
aattgtttacagaatggttcttgtactgcttatgcagaagttattggaattggttgtatggtttggtatggagatttggttgatattctacactt |
112 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| ||| ||| |||||| |
|
|
| T |
14521305 |
aattgtttggagaatgcttcttgtactgcttatgcagaagtaactggaattggttgtatggtttggcatggagatttggtcgatgttcaacactt |
14521211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 36289257 - 36289330
Alignment:
| Q |
28 |
agaatggttcttgtactgcttatgcagaagttattggaattggttgtatggtttggtatggagatttggttgat |
101 |
Q |
| |
|
||||| ||||||||||||| |||| | | | |||||||||||| |||||||||||| |||| || || |||||| |
|
|
| T |
36289257 |
agaatagttcttgtactgcctatgtaaatgctattggaattgggtgtatggtttggcatggggagttagttgat |
36289330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University