View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10229_low_2 (Length: 443)

Name: NF10229_low_2
Description: NF10229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10229_low_2
NF10229_low_2
[»] chr1 (18 HSPs)
chr1 (149-322)||(24552532-24552707)
chr1 (149-268)||(24562605-24562726)
chr1 (361-427)||(47498967-47499033)
chr1 (91-140)||(24552749-24552798)
chr1 (361-425)||(473036-473100)
chr1 (359-427)||(5894287-5894355)
chr1 (363-427)||(33541842-33541906)
chr1 (362-423)||(51688576-51688637)
chr1 (82-145)||(24562763-24562824)
chr1 (360-416)||(27820475-27820531)
chr1 (360-427)||(37473268-37473335)
chr1 (360-427)||(41195328-41195395)
chr1 (362-416)||(8081769-8081823)
chr1 (384-426)||(24552475-24552517)
chr1 (360-414)||(33546597-33546651)
chr1 (362-400)||(46423151-46423189)
chr1 (360-416)||(22343957-22344013)
chr1 (363-427)||(27146372-27146436)
[»] chr2 (12 HSPs)
chr2 (359-427)||(39659642-39659710)
chr2 (360-411)||(4606860-4606911)
chr2 (360-416)||(1633691-1633747)
chr2 (362-414)||(38010283-38010335)
chr2 (361-416)||(36534668-36534723)
chr2 (360-427)||(41407170-41407237)
chr2 (360-407)||(41812228-41812275)
chr2 (360-418)||(15757809-15757867)
chr2 (362-427)||(2416194-2416259)
chr2 (362-415)||(4074974-4075027)
chr2 (359-396)||(7043877-7043914)
chr2 (360-400)||(26143791-26143831)
[»] chr4 (12 HSPs)
chr4 (362-427)||(50662856-50662921)
chr4 (362-427)||(50681223-50681288)
chr4 (360-416)||(44797761-44797817)
chr4 (364-427)||(3155486-3155549)
chr4 (361-418)||(27026-27083)
chr4 (362-427)||(11389407-11389472)
chr4 (361-421)||(437370-437430)
chr4 (364-427)||(679136-679200)
chr4 (362-417)||(2987069-2987125)
chr4 (359-407)||(4212810-4212858)
chr4 (359-399)||(34213730-34213770)
chr4 (361-417)||(51629991-51630047)
[»] chr5 (11 HSPs)
chr5 (360-424)||(3735628-3735692)
chr5 (360-428)||(16938000-16938068)
chr5 (360-416)||(9202883-9202939)
chr5 (361-410)||(12433521-12433570)
chr5 (362-427)||(32372495-32372560)
chr5 (356-416)||(13697904-13697964)
chr5 (360-414)||(7706126-7706180)
chr5 (365-427)||(19460510-19460572)
chr5 (373-427)||(39105356-39105410)
chr5 (360-425)||(32703574-32703639)
chr5 (361-417)||(40426632-40426688)
[»] chr6 (5 HSPs)
chr6 (360-427)||(23063652-23063719)
chr6 (362-427)||(34430587-34430652)
chr6 (360-416)||(35069431-35069487)
chr6 (360-413)||(24626164-24626217)
chr6 (360-416)||(264250-264306)
[»] chr3 (13 HSPs)
chr3 (360-427)||(31365406-31365473)
chr3 (361-418)||(944363-944421)
chr3 (364-415)||(34610942-34610993)
chr3 (362-424)||(30956763-30956825)
chr3 (362-424)||(30972575-30972637)
chr3 (359-413)||(46886835-46886889)
chr3 (363-427)||(1508715-1508779)
chr3 (360-427)||(20257429-20257496)
chr3 (362-427)||(402665-402730)
chr3 (362-427)||(35959590-35959655)
chr3 (360-400)||(26990641-26990681)
chr3 (368-416)||(28240213-28240261)
chr3 (362-426)||(34235201-34235265)
[»] chr8 (5 HSPs)
chr8 (359-417)||(34236040-34236098)
chr8 (362-427)||(14956429-14956494)
chr8 (361-415)||(29819026-29819080)
chr8 (360-393)||(18133555-18133588)
chr8 (360-417)||(40980999-40981056)
[»] chr7 (13 HSPs)
chr7 (360-415)||(27863843-27863898)
chr7 (362-423)||(18865188-18865249)
chr7 (364-425)||(28900760-28900821)
chr7 (360-416)||(46139821-46139877)
chr7 (360-427)||(7241455-7241522)
chr7 (364-411)||(18965858-18965905)
chr7 (360-427)||(19131239-19131306)
chr7 (360-427)||(33672957-33673024)
chr7 (360-427)||(38500052-38500119)
chr7 (361-427)||(21568762-21568828)
chr7 (360-418)||(45263962-45264020)
chr7 (362-423)||(40196248-40196309)
chr7 (360-416)||(33128626-33128682)
[»] scaffold0050 (1 HSPs)
scaffold0050 (362-428)||(58475-58541)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 149 - 322
Target Start/End: Complemental strand, 24552707 - 24552532
Alignment:
Q  149 gaagataagcagtacttgtagttgcagaaatgg--aatgtagcagggcggcctcttgcaatgggatcaggagatatttgaacttctttaacctcaatatc 246  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24552707 gaagataagcagtacttgtagttgcagaaatggtgaatgtagcagggcggcctcttgcaatgggatcaggagatatttgaacttctttaacctcaatatc 24552608  T
Q  247 atagctagctttcttatctgtggcaaacatacaagataatcaggtaatatagtttattcaataaaagcaacactaa 322  Q
    ||||||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||    
T  24552607 atagctagctttcttatctgtggcatacatagaagataattaagtaatatagtttattcaataaaagcaacactaa 24552532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 149 - 268
Target Start/End: Complemental strand, 24562726 - 24562605
Alignment:
Q  149 gaagataagcagtacttgtagttgcagaaatgg--aatgtagcagggcggcctcttgcaatgggatcaggagatatttgaacttctttaacctcaatatc 246  Q
    ||||||||||| |||||||| ||||||||||||  |||||||||||  |||||||||||| ||| |||||||||||||||||| ||||||| | || |||    
T  24562726 gaagataagcattacttgtatttgcagaaatggtgaatgtagcaggttggcctcttgcaacggggtcaggagatatttgaactcctttaacttgaacatc 24562627  T
Q  247 atagctagctttcttatctgtg 268  Q
    ||||||| |||||||| |||||    
T  24562626 atagctatctttcttacctgtg 24562605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 427
Target Start/End: Complemental strand, 47499033 - 47498967
Alignment:
Q  361 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    ||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||| || |||||    
T  47499033 ctgtttggataaacaacttatttgcagcttatagcacaagtgcttatcatgataagcgcttgtgtat 47498967  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 24552798 - 24552749
Alignment:
Q  91 ataaagagacaccaaatgcatgaaaatggatataacaatctaaatttaaa 140  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  24552798 ataaagagacaccaaatgcatgagaatagatataacaatctaaatttaaa 24552749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 361 - 425
Target Start/End: Original strand, 473036 - 473100
Alignment:
Q  361 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgt 425  Q
    ||||||||||||||||||||| |||||||||||||| ||| | |||||||| |||||| ||||||    
T  473036 ctgtttggataaacaacttatttgcagcttacaacaaaagcgcttatcatggtaagcgcttatgt 473100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 427
Target Start/End: Complemental strand, 5894355 - 5894287
Alignment:
Q  359 tcctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    ||||||||||||||||| ||||| || |||||| | |||||||| ||||||||||||||| ||||||||    
T  5894355 tcctgtttggataaacagcttatttgaagcttatagcacaagtgcttatcatgataagcgcttatgtat 5894287  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 33541906 - 33541842
Alignment:
Q  363 gtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    ||||||||||||||||||| ||||| ||| | |||||||| ||||||||||||||| ||||||||    
T  33541906 gtttggataaacaacttatttgcagtttatagcacaagtgtttatcatgataagcgcttatgtat 33541842  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 423
Target Start/End: Original strand, 51688576 - 51688637
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttat 423  Q
    |||||||||||||||||||| ||||||||| |  ||||||| ||||||||||||| ||||||    
T  51688576 tgtttggataaacaacttatttgcagcttatagtacaagtgcttatcatgataagtgtttat 51688637  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 24562824 - 24562763
Alignment:
Q  82 cacacgtggataaagagacaccaaatgcatgaaaatggatataacaatctaaatttaaaaaaca 145  Q
    |||| ||| |||||||||||||||||||||||||||  ||| |||| |||||||||||||||||    
T  24562824 cacatgtgcataaagagacaccaaatgcatgaaaat--atagaacagtctaaatttaaaaaaca 24562763  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 27820531 - 27820475
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataag 416  Q
    |||||||||||||||||||||| ||||||||| | || ||| | |||||||||||||    
T  27820531 cctgtttggataaacaacttatttgcagcttatagcataagcgcttatcatgataag 27820475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 427
Target Start/End: Original strand, 37473268 - 37473335
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    |||||||||||||||||||||| |||||||||   |||||||  ||||||||| ||||  ||||||||    
T  37473268 cctgtttggataaacaacttatttgcagcttattgcacaagttcttatcatgacaagcacttatgtat 37473335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 427
Target Start/End: Complemental strand, 41195395 - 41195328
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    |||||||||||||| ||||||| ||||||||| | |||||| | ||||| |||||| || ||||||||    
T  41195395 cctgtttggataaataacttatttgcagcttatagcacaagcgcttatcctgataatcgcttatgtat 41195328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 8081769 - 8081823
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataag 416  Q
    |||||||||||||||||||| ||||||||| |    |||||||||||||||||||    
T  8081769 tgtttggataaacaacttatctgcagcttatagattaagtgattatcatgataag 8081823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 426
Target Start/End: Complemental strand, 24552517 - 24552475
Alignment:
Q  384 gcagcttacaacacaagtgattatcatgataagcgtttatgta 426  Q
    |||||||| | |||||||||||||||||||||||| |||||||    
T  24552517 gcagcttatagcacaagtgattatcatgataagcgcttatgta 24552475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 414
Target Start/End: Complemental strand, 33546651 - 33546597
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgata 414  Q
    |||||||||||||||| |||||  |||||||| | |||||||| |||||||||||    
T  33546651 cctgtttggataaacagcttattcgcagcttaaagcacaagtgtttatcatgata 33546597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 400
Target Start/End: Original strand, 46423151 - 46423189
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaag 400  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  46423151 tgtttggataaacaacttatttgcagcttataacacaag 46423189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 22343957 - 22344013
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataag 416  Q
    ||||||||||||| |||||||| |||| |||||  |||||| | |||||||||||||    
T  22343957 cctgtttggataatcaacttatttgcaacttaccgcacaagcgcttatcatgataag 22344013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 27146436 - 27146372
Alignment:
Q  363 gtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    ||||||||||| | ||||| ||||||||| | || ||||   |||||||||||||||||||||||    
T  27146436 gtttggataaatagcttatttgcagcttatagcataagtacatatcatgataagcgtttatgtat 27146372  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 427
Target Start/End: Complemental strand, 39659710 - 39659642
Alignment:
Q  359 tcctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    ||||||||||||||||||||||| ||||||||| | ||||| || ||||||||||||||| ||||||||    
T  39659710 tcctgtttggataaacaacttatttgcagcttagagcacaaatgcttatcatgataagcgcttatgtat 39659642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 4606860 - 4606911
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatg 411  Q
    ||||||||||||||||||||||  |||||||| |||||||||| ||||||||    
T  4606860 cctgtttggataaacaacttattcgcagcttataacacaagtgcttatcatg 4606911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 1633747 - 1633691
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataag 416  Q
    |||||||||||||||| ||||| ||||||||| | || ||||| |||||||||||||    
T  1633747 cctgtttggataaacagcttatttgcagcttatagcagaagtgcttatcatgataag 1633691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 414
Target Start/End: Original strand, 38010283 - 38010335
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgata 414  Q
    ||||| |||||||||||||| ||||||||| | |||||||| |||||||||||    
T  38010283 tgtttagataaacaacttatttgcagcttatatcacaagtgcttatcatgata 38010335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 36534668 - 36534723
Alignment:
Q  361 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataag 416  Q
    ||||||||||||||||||||| | ||| ||| |||| ||||| |||||||||||||    
T  36534668 ctgtttggataaacaacttattttcagtttataacataagtgcttatcatgataag 36534723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 427
Target Start/End: Original strand, 41407170 - 41407237
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    |||||||||||||||| ||| | ||||||||| | |||||| | ||||||||||||||  ||||||||    
T  41407170 cctgtttggataaacagcttgtttgcagcttatagcacaagcgcttatcatgataagcacttatgtat 41407237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 407
Target Start/End: Complemental strand, 41812275 - 41812228
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattat 407  Q
    |||||||||||||||||||||| ||||| ||| | |||||||||||||    
T  41812275 cctgtttggataaacaacttatttgcagtttatagcacaagtgattat 41812228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 15757867 - 15757809
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcg 418  Q
    |||||||||||||||| ||||| | ||||||| | |||||| | |||||||||||||||    
T  15757867 cctgtttggataaacagcttattttcagcttatagcacaagcgcttatcatgataagcg 15757809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 427
Target Start/End: Original strand, 2416194 - 2416259
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    |||||||||||||||||||| | ||||||| | |||||||  |||||||| |||| | ||||||||    
T  2416194 tgtttggataaacaacttattttcagcttatagcacaagttcttatcatgttaagtgcttatgtat 2416259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 4075027 - 4074974
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataa 415  Q
    ||||||||||||||| ||||||| |||||| || ||| ||| ||||||||||||    
T  4075027 tgtttggataaacaatttatatgaagcttataagacaggtgtttatcatgataa 4074974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 7043914 - 7043877
Alignment:
Q  359 tcctgtttggataaacaacttatatgcagcttacaaca 396  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  7043914 tcctgtttggataaacaacttatttgcagcttataaca 7043877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 26143831 - 26143791
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaag 400  Q
    |||||||||||||||||||||| ||||| ||| ||||||||    
T  26143831 cctgtttggataaacaacttatttgcagtttataacacaag 26143791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 427
Target Start/End: Complemental strand, 50662921 - 50662856
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    |||||||||||||||||||| ||||||||| | |||||| | |||||||||| |||||||||||||    
T  50662921 tgtttggataaacaacttatttgcagcttatatcacaagagcttatcatgatgagcgtttatgtat 50662856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 427
Target Start/End: Complemental strand, 50681288 - 50681223
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    |||||||||||||||||||| |  |||||| | ||||||   ||||||||||||||||||||||||    
T  50681288 tgtttggataaacaacttatttatagcttatagcacaagaacttatcatgataagcgtttatgtat 50681223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 44797761 - 44797817
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataag 416  Q
    |||||||||||||||||||||| |||| |||| | |||||| |||||||||| ||||    
T  44797761 cctgtttggataaacaacttatttgcaacttatagcacaagcgattatcatggtaag 44797817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 427
Target Start/End: Original strand, 3155486 - 3155549
Alignment:
Q  364 tttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    |||||||||||||||||| ||||||||| |  ||||| | |||||||||||||| | |||||||    
T  3155486 tttggataaacaacttatctgcagcttatagtacaagcgcttatcatgataagcatgtatgtat 3155549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 27083 - 27026
Alignment:
Q  361 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcg 418  Q
    ||||||||||||||| ||| | ||||||||| | |||||| | |||||||||||||||    
T  27083 ctgtttggataaacatcttgtttgcagcttatagcacaagcgcttatcatgataagcg 27026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 427
Target Start/End: Original strand, 11389407 - 11389472
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    |||||||||||||||||||| ||||| ||| | ||  |||| ||||||||||||| | ||||||||    
T  11389407 tgtttggataaacaacttatttgcagtttatatcatgagtgcttatcatgataagtgcttatgtat 11389472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 421
Target Start/End: Complemental strand, 437430 - 437370
Alignment:
Q  361 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgttt 421  Q
    |||||||||||||| |||||| ||||||||| || |||||   ||||||||||||| ||||    
T  437430 ctgtttggataaacgacttatttgcagcttataatacaagcttttatcatgataagtgttt 437370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 427
Target Start/End: Original strand, 679136 - 679200
Alignment:
Q  364 tttggataaacaactt-atatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    |||||||||||||||| || || |||||| |||||| ||| |||| |||||||||| ||||||||    
T  679136 tttggataaacaacttaatttgtagcttataacacatgtgcttataatgataagcgcttatgtat 679200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 2987069 - 2987125
Alignment:
Q  362 tgtttggataaacaactta-tatgcagcttacaacacaagtgattatcatgataagc 417  Q
    ||||||||||||||| ||| | ||||||||| |||| ||||| ||||||||||||||    
T  2987069 tgtttggataaacaagttaatttgcagcttataacataagtgtttatcatgataagc 2987125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 4212810 - 4212858
Alignment:
Q  359 tcctgtttggataaacaacttatatgcagcttacaacacaagtgattat 407  Q
    ||||||||||||||||||||||| | ||||||| | |||||| ||||||    
T  4212810 tcctgtttggataaacaacttattttcagcttatagcacaagcgattat 4212858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 399
Target Start/End: Complemental strand, 34213770 - 34213730
Alignment:
Q  359 tcctgtttggataaacaacttatatgcagcttacaacacaa 399  Q
    |||||||||||||| |||||||| ||||||||| |||||||    
T  34213770 tcctgtttggataagcaacttatttgcagcttataacacaa 34213730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 417
Target Start/End: Original strand, 51629991 - 51630047
Alignment:
Q  361 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagc 417  Q
    |||||| |||||||| ||||| ||  |||||||||||||||| |||| |||||||||    
T  51629991 ctgtttagataaacaccttatttgaggcttacaacacaagtgcttattatgataagc 51630047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 3735692 - 3735628
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatg 424  Q
    |||||||||||||||||| ||| ||||||||| | |||||| ||||||||||||||||| |||||    
T  3735692 cctgtttggataaacaacctatttgcagcttatagcacaagagattatcatgataagcgcttatg 3735628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 428
Target Start/End: Complemental strand, 16938068 - 16938000
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtatt 428  Q
    |||||||||| ||||||||||| || |||||| |||||||||| ||||||||||||||  |||||||||    
T  16938068 cctgtttggacaaacaacttatttgaagcttataacacaagtgtttatcatgataagcacttatgtatt 16938000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 9202939 - 9202883
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataag 416  Q
    |||||||||||||||| ||||| ||||||||| | |||||||| |||||||||||||    
T  9202939 cctgtttggataaacatcttatttgcagcttatagcacaagtgtttatcatgataag 9202883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 12433570 - 12433521
Alignment:
Q  361 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcat 410  Q
    ||||||||||||||||||||| ||||||||| |||||||| | |||||||    
T  12433570 ctgtttggataaacaacttatttgcagcttataacacaagcgtttatcat 12433521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 427
Target Start/End: Original strand, 32372495 - 32372560
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    |||||||||||||||||||| ||||||||| | ||||||   ||||||||||||||  ||||||||    
T  32372495 tgtttggataaacaacttatttgcagcttatagcacaagcacttatcatgataagcccttatgtat 32372560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 13697964 - 13697904
Alignment:
Q  356 tattcctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataag 416  Q
    |||| ||||||||||||||||||||| ||||||||| |||| |||   |||||||||||||    
T  13697964 tattactgtttggataaacaacttatttgcagcttataacataagcatttatcatgataag 13697904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 414
Target Start/End: Complemental strand, 7706180 - 7706126
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgata 414  Q
    |||||||| ||||||||||||| ||||| ||| | |||||||| |||||||||||    
T  7706180 cctgtttgtataaacaacttatttgcaggttatagcacaagtgcttatcatgata 7706126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 427
Target Start/End: Complemental strand, 19460572 - 19460510
Alignment:
Q  365 ttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    ||||||||||| ||||| ||||||||| | ||||| || ||||||||||||||  ||||||||    
T  19460572 ttggataaacagcttatttgcagcttatagcacaaatgcttatcatgataagcacttatgtat 19460510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 427
Target Start/End: Original strand, 39105356 - 39105410
Alignment:
Q  373 acaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    ||||||||| ||||||||| | || ||||| ||||||||||||||| ||||||||    
T  39105356 acaacttatttgcagcttatagcataagtgcttatcatgataagcgcttatgtat 39105410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 32703639 - 32703574
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgt 425  Q
    ||||||| || ||||||||||| ||||||||| | ||||||   ||||||||||||||| ||||||    
T  32703639 cctgtttagaaaaacaacttatttgcagcttatagcacaagcatttatcatgataagcgcttatgt 32703574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 417
Target Start/End: Original strand, 40426632 - 40426688
Alignment:
Q  361 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagc 417  Q
    |||||||||||||||||| || ||||||||| | ||||||   ||||||||||||||    
T  40426632 ctgtttggataaacaactcatttgcagcttatagcacaagcacttatcatgataagc 40426688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 427
Target Start/End: Complemental strand, 23063719 - 23063652
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    ||||||||||| | |||||||| |||| |||| | ||||| |||||||||||||||||||||||||||    
T  23063719 cctgtttggattatcaacttatttgcatcttatagcacaaatgattatcatgataagcgtttatgtat 23063652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 427
Target Start/End: Original strand, 34430587 - 34430652
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    ||||| |||||||| ||||| ||||||||| | |||||||| ||||||||||| ||| ||||||||    
T  34430587 tgtttcgataaacatcttatttgcagcttatagcacaagtgcttatcatgataggcgcttatgtat 34430652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 35069431 - 35069487
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataag 416  Q
    ||||||| |||||||||||||| ||||||||| | |||||| | |||||||||||||    
T  35069431 cctgttttgataaacaacttatttgcagcttatagcacaagcgtttatcatgataag 35069487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 413
Target Start/End: Original strand, 24626164 - 24626217
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgat 413  Q
    |||||||||||||||||||||| | ||||||| | ||||| || ||||||||||    
T  24626164 cctgtttggataaacaacttatttacagcttatagcacaaatgcttatcatgat 24626217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 264250 - 264306
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataag 416  Q
    ||||||||||| |||| || || ||||||||| | |||||||| |||||||||||||    
T  264250 cctgtttggattaacagctaatttgcagcttatagcacaagtgcttatcatgataag 264306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 427
Target Start/End: Complemental strand, 31365473 - 31365406
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    ||||| |||||||||| ||||| ||||||||| | |||||||||||||||||||||||  ||||||||    
T  31365473 cctgtgtggataaacagcttatttgcagcttatagcacaagtgattatcatgataagcacttatgtat 31365406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 944363 - 944421
Alignment:
Q  361 ctgtttggataaacaacttatatgcagcttacaacac-aagtgattatcatgataagcg 418  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||||||    
T  944363 ctgtttggataaacaacttatttgcagcttataacactaagtgcttatcatgataagcg 944421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 415
Target Start/End: Complemental strand, 34610993 - 34610942
Alignment:
Q  364 tttggataaacaacttatatgcagcttacaacacaagtgattatcatgataa 415  Q
    |||||||||||||||||| ||||||||| |||||||| | ||||||||||||    
T  34610993 tttggataaacaacttatctgcagcttataacacaagcgcttatcatgataa 34610942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 424
Target Start/End: Complemental strand, 30956825 - 30956763
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatg 424  Q
    |||||||||||||| ||||| ||||||||| | |||||| | |||||||||||||| ||||||    
T  30956825 tgtttggataaacagcttatttgcagcttatagcacaagggcttatcatgataagcatttatg 30956763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 424
Target Start/End: Complemental strand, 30972637 - 30972575
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatg 424  Q
    |||||||||||||| ||||| ||||||||| | |||||| | |||||||||||||| ||||||    
T  30972637 tgtttggataaacagcttatttgcagcttatagcacaagggcttatcatgataagcatttatg 30972575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 46886889 - 46886835
Alignment:
Q  359 tcctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgat 413  Q
    ||||||||||||||||||||||| ||||||||| | || ||||| ||||||||||    
T  46886889 tcctgtttggataaacaacttatttgcagcttatagcataagtgcttatcatgat 46886835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 1508779 - 1508715
Alignment:
Q  363 gtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    ||||||| ||||| ||||| |||| |||| | |||||||| ||||||||||||||| ||||||||    
T  1508779 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtat 1508715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 427
Target Start/End: Original strand, 20257429 - 20257496
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    ||||||||||| ||||| |||| ||||||||| ||||||||   |||||| |||||||| ||||||||    
T  20257429 cctgtttggattaacaatttatttgcagcttataacacaagactttatcacgataagcgcttatgtat 20257496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 427
Target Start/End: Complemental strand, 402730 - 402665
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    |||||| | ||||||||||| ||||||| | | |||||||| ||||||||||||| | ||||||||    
T  402730 tgtttgaacaaacaacttatttgcagctcatagcacaagtgcttatcatgataagggcttatgtat 402665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 427
Target Start/End: Complemental strand, 35959655 - 35959590
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    |||||||||||||| ||||| ||||||||| | ||||||   ||||||||||||| | ||||||||    
T  35959655 tgtttggataaacagcttatttgcagcttatatcacaagctcttatcatgataagagcttatgtat 35959590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 26990681 - 26990641
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaag 400  Q
    ||||||||||| ||||||||||||||| |||| ||||||||    
T  26990681 cctgtttggatcaacaacttatatgcaacttataacacaag 26990641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 416
Target Start/End: Original strand, 28240213 - 28240261
Alignment:
Q  368 gataaacaacttatatgcagcttacaacacaagtgattatcatgataag 416  Q
    |||||||||||||| ||||||||| | |||||| | |||||||||||||    
T  28240213 gataaacaacttatctgcagcttatagcacaagcgcttatcatgataag 28240261  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 426
Target Start/End: Complemental strand, 34235265 - 34235201
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgta 426  Q
    |||||||||||||||||||| || |||||| |  ||| ||| ||||||||||||||  |||||||    
T  34235265 tgtttggataaacaacttatttgtagcttatagtacatgtgcttatcatgataagcacttatgta 34235201  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 359 - 417
Target Start/End: Original strand, 34236040 - 34236098
Alignment:
Q  359 tcctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagc 417  Q
    ||||||||||||||||||||||| ||||||||| |||||||  | ||||||||||||||    
T  34236040 tcctgtttggataaacaacttatttgcagcttataacacaaacggttatcatgataagc 34236098  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 427
Target Start/End: Complemental strand, 14956494 - 14956429
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    |||||||||||||||||||| ||||||||| | |||||  | ||||||||||||||  ||||||||    
T  14956494 tgtttggataaacaacttatttgcagcttatagcacaatcgcttatcatgataagcacttatgtat 14956429  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 29819080 - 29819026
Alignment:
Q  361 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataa 415  Q
    ||||||||||||||||||||| ||||||||| | || ||| | ||||||||||||    
T  29819080 ctgtttggataaacaacttatttgcagcttatagcaaaagggcttatcatgataa 29819026  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 393
Target Start/End: Original strand, 18133555 - 18133588
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttaca 393  Q
    |||||||||||||||||||||| |||||||||||    
T  18133555 cctgtttggataaacaacttatttgcagcttaca 18133588  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 40980999 - 40981056
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagc 417  Q
    |||||||||||||||| ||||| ||||||||| | |||||| | ||||| ||||||||    
T  40980999 cctgtttggataaacagcttatttgcagcttatagcacaagcgcttatcttgataagc 40981056  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 415
Target Start/End: Complemental strand, 27863898 - 27863843
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataa 415  Q
    |||||||||||||||||||||| || |||||| | |||||||| ||||||||||||    
T  27863898 cctgtttggataaacaacttatttgtagcttatagcacaagtgcttatcatgataa 27863843  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 423
Target Start/End: Complemental strand, 18865249 - 18865188
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttat 423  Q
    |||||||||||||||||||| ||||||||| | |||||  | ||||||||||||| ||||||    
T  18865249 tgtttggataaacaacttatttgcagcttatagcacaaacgcttatcatgataagtgtttat 18865188  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 425
Target Start/End: Original strand, 28900760 - 28900821
Alignment:
Q  364 tttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgt 425  Q
    |||||||||||||||||| ||||||||| ||||||||   |||| |||||||||| ||||||    
T  28900760 tttggataaacaacttatttgcagcttataacacaagcatttattatgataagcgcttatgt 28900821  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 46139821 - 46139877
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataag 416  Q
    ||||||||| |||||||||||| ||||||||| ||||||||   |||||||||||||    
T  46139821 cctgtttggttaaacaacttatttgcagcttataacacaagcacttatcatgataag 46139877  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 427
Target Start/End: Complemental strand, 7241522 - 7241455
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    ||||||||||  |||||||||| ||||| ||  |||||||||| | ||||||||||| ||||||||||    
T  7241522 cctgtttggacgaacaacttatttgcaggttttaacacaagtgttcatcatgataagtgtttatgtat 7241455  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 18965905 - 18965858
Alignment:
Q  364 tttggataaacaacttatatgcagcttacaacacaagtgattatcatg 411  Q
    |||||||||||| |||||||| |||||| |||||||||| ||||||||    
T  18965905 tttggataaacatcttatatgtagcttataacacaagtgtttatcatg 18965858  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 427
Target Start/End: Original strand, 19131239 - 19131306
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    |||||||||||||||| ||| | || |||||| | ||||||  ||||| |||||||||||||||||||    
T  19131239 cctgtttggataaacagcttgtttgaagcttatagcacaagcaattattatgataagcgtttatgtat 19131306  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 427
Target Start/End: Original strand, 33672957 - 33673024
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    ||||||||||||||| | |||| ||||||||| | |||||||  |||| |||||||||| ||||||||    
T  33672957 cctgtttggataaactatttatttgcagcttatagcacaagtatttattatgataagcgcttatgtat 33673024  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 427
Target Start/End: Complemental strand, 38500119 - 38500052
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    ||||||| |||||||| ||||| ||||| ||| | |||||| | ||||||||||||||| ||||||||    
T  38500119 cctgtttagataaacagcttatttgcagtttatagcacaagcgcttatcatgataagcgcttatgtat 38500052  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 427
Target Start/End: Complemental strand, 21568828 - 21568762
Alignment:
Q  361 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 427  Q
    ||||||||||||||| ||| | ||||||||| | || ||||| ||||||||||||||  ||||||||    
T  21568828 ctgtttggataaacagcttgtttgcagcttatagcataagtgcttatcatgataagcacttatgtat 21568762  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 45263962 - 45264020
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcg 418  Q
    |||||||||||||||||||||| ||| |||||  ||||||| | ||||||||| |||||    
T  45263962 cctgtttggataaacaacttatttgcggcttatcacacaagcgcttatcatgaaaagcg 45264020  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 423
Target Start/End: Original strand, 40196248 - 40196309
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttat 423  Q
    |||||||||||||||||||| || || ||||| |||| | | ||||||||||||||| ||||    
T  40196248 tgtttggataaacaacttatttgtagtttacagcacatgcgcttatcatgataagcgcttat 40196309  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 33128626 - 33128682
Alignment:
Q  360 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataag 416  Q
    |||||||||||||||| ||||| ||||||||||| |||||    |||||||||||||    
T  33128626 cctgtttggataaacagcttatttgcagcttacagcacaaacacttatcatgataag 33128682  T

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Target: scaffold0050 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 428
Target Start/End: Original strand, 58475 - 58541
Alignment:
Q  362 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtatt 428  Q
    |||||||||||||||||||| ||||||||| | |||||||| || |||| ||||||  |||||||||    
T  58475 tgtttggataaacaacttatttgcagcttagagcacaagtgcttgtcataataagcacttatgtatt 58541  T

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