View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10229_low_4 (Length: 358)
Name: NF10229_low_4
Description: NF10229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10229_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 49139232 - 49138886
Alignment:
| Q |
1 |
caaggacaggtatgagaggtgtttcaacaataataggaagagaccaaggaataataataatcataatcattcctttaaaagagatgtcaagggttattgg |
100 |
Q |
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| T |
49139232 |
caaggacaggtatgagaggtgtttcaacaataataggaagagaccaaggaataataataatcataatcattcctttaaaagagatgtcaagggttattgg |
49139133 |
T |
|
| Q |
101 |
gagagggataagtcttctaatgacttggtctttcgctccggaacttgggaaccgaatcttcatacttcccaacacaaaatggacatagacaaccccatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49139132 |
gagagggataagtcttctaatgacttggtctttcgctccggaacttgggaacccaatcttcatacttcccaacacaaaatggacatagacaaccccatca |
49139033 |
T |
|
| Q |
201 |
aacaggaaaaacccaaggagaccgttcctgttcctgaggaaaaagccagacagtatcagttggatgttcttgagcaggcaaagaccagaaatacaatagc |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49139032 |
aacaggaaaaacccaaggagactgttcctgttcctgaggaaaaagccagacagtatcagttggatgttcttgagcaggcaaagaccagaaatacaatagc |
49138933 |
T |
|
| Q |
301 |
ttttctagaaactggagctggcaaaaccctcattgccgttcatctca |
347 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49138932 |
ttttctagaaactggagctggcaaaaccctcattgccgttcttctca |
49138886 |
T |
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