View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10229_low_5 (Length: 351)
Name: NF10229_low_5
Description: NF10229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10229_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 28752300 - 28751980
Alignment:
| Q |
14 |
tggacatcatgaaaaggattataaggaaatttcatccgagacaactactacttttaaagaagattccgaggagaaagcaacaacaccagaagataatgct |
113 |
Q |
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| T |
28752300 |
tggaaatcatgaaaaggattataaggaaatttcatccgagacaactactacttttaaagaagattccgaggagaaagcaacaacaccagaagataatgct |
28752201 |
T |
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| Q |
114 |
ttgcttttcgagtataggaacactcttatgaattatgaagaagtgaagaacaaactcaacgaattagagaagaatcatcaagatgcactctttgagtcat |
213 |
Q |
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| T |
28752200 |
ttgcttttagagtataggaacactcttatgaattatgaagaagtgaagaacaaactcagcgaattagagaagaatcatcaagatgcactctttgagtcat |
28752101 |
T |
|
| Q |
214 |
cattgcaggtgaaagaattgaagacttctaatgccgtgaaagacgaagagattcgactcctacgtcagaaactaagtcttttgcacaaaagccttgaggg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28752100 |
cattgcaggtgaaagaattgaagacttctaatgccgtgaaagacgaagagattcgactcctacgtcagaaactaagtcttttgcacaaaagccttgaggg |
28752001 |
T |
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| Q |
314 |
aaatgaagaaatcggagagtt |
334 |
Q |
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||||||||||||||||||||| |
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| T |
28752000 |
aaatgaagaaatcggagagtt |
28751980 |
T |
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