View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10229_low_9 (Length: 331)
Name: NF10229_low_9
Description: NF10229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10229_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 2413089 - 2413403
Alignment:
| Q |
1 |
actgcaaagcaaactgataaaccttttgtgcagtcctcaacaaaagcttagaataagttggatcaacttttctaaaaacaatagacgccgcagcaagtgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2413089 |
actgcaaagcaaactgataaaccttttgtgcagtcctcaacaaaagcttagaataagttggatcaacttttctaaaaacaatagacgccgcagcaagtgc |
2413188 |
T |
|
| Q |
101 |
agcagcggtttcagcggcaacatcagaaccaggattctttgaagatacgtaataaacagttctaacagtgtccatatcttctggtctttcccaacatttg |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2413189 |
agcagcggtttcagcggcaacatcagaaccgggattctttgaagatacgaaataaacagttctaacagtgtccatatcttctggtctttcccaacatttg |
2413288 |
T |
|
| Q |
201 |
tgatcaacatttggatctccaacaccaacatagagtcttccaggtgttgatgttgcacatttgaggagataatctgtcgcgtggcgaattgcagctcttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2413289 |
tgatcaacatttggatctccaacaccaacatagagtcttccaggtgttgatgttgcacatttgaggagataatctgtcgcgtggcgaattgcagctcttg |
2413388 |
T |
|
| Q |
301 |
cttctttcatttgtg |
315 |
Q |
| |
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||||||||||||||| |
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| T |
2413389 |
cttctttcatttgtg |
2413403 |
T |
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