View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1022_high_3 (Length: 278)
Name: NF1022_high_3
Description: NF1022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1022_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 3959541 - 3959411
Alignment:
| Q |
97 |
cagtttacctcaaaatgggaacatagaaaacgagggaactaaagacacaaccagtattataaaccatgcctctgagttaaactttgttgtgtttcattct |
196 |
Q |
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| T |
3959541 |
cagtttacctcaaaatgggaacatagaaaaggagggaactaaagacacaaccagtattataaaccatgcctctgagttaaactttgttgtgtctcattca |
3959442 |
T |
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| Q |
197 |
gcaaaagggagctgcacctcactccagtcct |
227 |
Q |
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| T |
3959441 |
gcaaaagggagctgcacctcactccagtcct |
3959411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 3959863 - 3959779
Alignment:
| Q |
14 |
agacataagagaattaggagcagaaaagaagggatatatttactatataagtttcaccaacgataaagggcatatatatgtacca |
98 |
Q |
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| T |
3959863 |
agacataagagaattaggagcagaaaagaagggatatatttactatataagtttcaccaacgataaagggcatatatatgtacca |
3959779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 19167640 - 19167705
Alignment:
| Q |
97 |
cagtttacctcaaaat-gggaacatagaaaacgagggaactaaagacacaaccagtattataaacc |
161 |
Q |
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| T |
19167640 |
cagtttacttcaaaattgggaacaaagaaatggaaggaactaaagacacaaccaatattataaacc |
19167705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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