View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1022_high_5 (Length: 253)
Name: NF1022_high_5
Description: NF1022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1022_high_5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 28 - 253
Target Start/End: Original strand, 2069234 - 2069459
Alignment:
| Q |
28 |
aatgatgttaacggtccaaagccaaatcttgctcaattaaatcattatctctttgaagaatagtagaacaaagagggcgcctgagaccttgtctgcgcta |
127 |
Q |
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| T |
2069234 |
aatgatgttaacggtccaaagccaaatcttgctcaattaaatcattatctctttgaagaatagtagaacaaggagggcgcctgagaccttgtctgcgcta |
2069333 |
T |
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| Q |
128 |
ataacatcaatgtctctttgtataggcgccacacaatgcggaggaactgatgtattaccaaccaatatgtgagtatcagaaggagtctcctcaaagtctg |
227 |
Q |
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| T |
2069334 |
ataacatcaatgtctctttgtataggcgccacacaatgcagaggaattgatgtattaccaaccaaaatgtgagtatcagaaggagtctcctcaaagtctg |
2069433 |
T |
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| Q |
228 |
aaacttgaatattcgcttgtgcattc |
253 |
Q |
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|||||||||||||||||||||||||| |
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| T |
2069434 |
aaacttgaatattcgcttgtgcattc |
2069459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 28 - 253
Target Start/End: Original strand, 2073580 - 2073805
Alignment:
| Q |
28 |
aatgatgttaacggtccaaagccaaatcttgctcaattaaatcattatctctttgaagaatagtagaacaaagagggcgcctgagaccttgtctgcgcta |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
2073580 |
aatgatgttaacggtccaaagccaaatcttgctcaattaaatcattatctctttgaagaatagtagaacaaggagggcgcctgagaccttgtccgcgcta |
2073679 |
T |
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| Q |
128 |
ataacatcaatgtctctttgtataggcgccacacaatgcggaggaactgatgtattaccaaccaatatgtgagtatcagaaggagtctcctcaaagtctg |
227 |
Q |
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| T |
2073680 |
ataacatgaatgtctctttgtataggcgccacacaatgcggaggaattgatgtattaccaaccaaaatgtgagtatcagaaggagtctcctcaaagtctg |
2073779 |
T |
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| Q |
228 |
aaacttgaatattcgcttgtgcattc |
253 |
Q |
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| T |
2073780 |
aaacttgaatattcgcttgtgcattc |
2073805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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